BIRDMAn: A Bayesian differential abundance framework that enables robust inference of host-microbe associations

por Rahman, Gibraan, Morton, James T., Martino, Cameron, Sepich-Poore, Gregory D., Allaband, Celeste, Guccione, Caitlin, Chen, Yang, Hakim, Daniel, Estaki, Mehrbod, Knight, Rob
Publicado 2023

A miRNA Host Response Signature Accurately Discriminates Acute Respiratory Infection Etiologies

por Poore, Gregory D., Ko, Emily R., Valente, Ashlee, Henao, Ricardo, Sumner, Kelsey, Hong, Christopher, Burke, Thomas W., Nichols, Marshall, McClain, Micah T., Huang, Erich S., Ginsburg, Geoffrey S., Woods, Christopher W., Tsalik, Ephraim L.
Publicado 2018

Signatures of HIV and Major Depressive Disorder in the Plasma Microbiome

por Taylor, Bryn C., Sheikh Andalibi, Mohammadsobhan, Wandro, Stephen, Weldon, Kelly C., Sepich-Poore, Gregory D., Carpenter, Carolina S., Fraraccio, Serena, Franklin, Donald, Iudicello, Jennifer E., Letendre, Scott, Gianella, Sara, Grant, Igor, Ellis, Ronald J., Heaton, Robert K., Knight, Rob, Swafford, Austin D.
Publicado 2023

Mutational landscapes of tongue carcinoma reveal recurrent mutations in genes of therapeutic and prognostic relevance

por Vettore, Andre Luiz, Ramnarayanan, Kalpana, Poore, Gregory, Lim, Kevin, Ong, Choon Kiat, Huang, Kie Kyon, Leong, Hui Sun, Chong, Fui Teen, Lim, Tony Kiat-Hon, Lim, Weng Khong, Cutcutache, Ioana, Mcpherson, John R., Suzuki, Yuka, Zhang, Shenli, Skanthakumar, Thakshayeni, Wang, Weining, Tan, Daniel SW, Cho, Byoung Chul, Teh, Bin Tean, Rozen, Steve, Tan, Patrick, Iyer, N. Gopalakrishna
Publicado 2015

Phylogeny-Aware Analysis of Metagenome Community Ecology Based on Matched Reference Genomes while Bypassing Taxonomy

por Zhu, Qiyun, Huang, Shi, Gonzalez, Antonio, McGrath, Imran, McDonald, Daniel, Haiminen, Niina, Armstrong, George, Vázquez-Baeza, Yoshiki, Yu, Julian, Kuczynski, Justin, Sepich-Poore, Gregory D., Swafford, Austin D., Das, Promi, Shaffer, Justin P., Lejzerowicz, Franck, Belda-Ferre, Pedro, Havulinna, Aki S., Méric, Guillaume, Niiranen, Teemu, Lahti, Leo, Salomaa, Veikko, Kim, Ho-Cheol, Jain, Mohit, Inouye, Michael, Gilbert, Jack A., Knight, Rob
Publicado 2022

Pan-cancer analyses reveal cancer-type-specific fungal ecologies and bacteriome interactions

por Narunsky-Haziza, Lian, Sepich-Poore, Gregory D., Livyatan, Ilana, Asraf, Omer, Martino, Cameron, Nejman, Deborah, Gavert, Nancy, Stajich, Jason E., Amit, Guy, González, Antonio, Wandro, Stephen, Perry, Gili, Ariel, Ruthie, Meltser, Arnon, Shaffer, Justin P., Zhu, Qiyun, Balint-Lahat, Nora, Barshack, Iris, Dadiani, Maya, Gal-Yam, Einav N., Patel, Sandip Pravin, Bashan, Amir, Swafford, Austin D., Pilpel, Yitzhak, Knight, Rob, Straussman, Ravid
Publicado 2022

Translocation of Viable Gut Microbiota to Mesenteric Adipose Drives Formation of Creeping Fat in Humans

por Ha, Connie W.Y., Martin, Anthony, Sepich-Poore, Gregory D., Shi, Baochen, Wang, Yizhou, Gouin, Kenneth, Humphrey, Gregory, Sanders, Karenina, Ratnayake, Yasiru, Chan, Kelvin S.L., Hendrick, Gustaf, Caldera, J.R., Arias, Christian, Moskowitz, Jacob E., Ho Sui, Shannan J., Yang, Shaohong, Underhill, David, Brady, Matthew J., Knott, Simon, Kaihara, Kelly, Steinbaugh, Michael J., Li, Huiying, McGovern, Dermot P.B., Knight, Rob, Fleshner, Phillip, Devkota, Suzanne
Publicado 2020