MetaboListem and TABoLiSTM: Two Deep Learning Algorithms for Metabolite Named Entity Recognition

por Yeung, Cheng S., Beck, Tim, Posma, Joram M.
Publicado 2022

MetaboNetworks, an interactive Matlab-based toolbox for creating, customizing and exploring sub-networks from KEGG

por Posma, Joram M., Robinette, Steven L., Holmes, Elaine, Nicholson, Jeremy K.
Publicado 2014

Overweight Is an Independent Risk Factor for Reduced Lung Volumes in Myotonic Dystrophy Type 1

por Seijger, Charlotte G. W., Drost, Gea, Posma, Joram M., van Engelen, Baziel G. M., Heijdra, Yvonne F.
Publicado 2016

MetaboSignal: a network-based approach for topological analysis of metabotype regulation via metabolic and signaling pathways

por Rodriguez-Martinez, Andrea, Ayala, Rafael, Posma, Joram M, Neves, Ana L, Gauguier, Dominique, Nicholson, Jeremy K, Dumas, Marc-Emmanuel
Publicado 2017

Optimized Phenotypic Biomarker Discovery and Confounder Elimination via Covariate-Adjusted Projection to Latent Structures from Metabolic Spectroscopy Data

por Posma, Joram M., Garcia-Perez, Isabel, Ebbels, Timothy M. D., Lindon, John C., Stamler, Jeremiah, Elliott, Paul, Holmes, Elaine, Nicholson, Jeremy K.
Publicado 2018

MWASTools: an R/bioconductor package for metabolome-wide association studies

por Rodriguez-Martinez, Andrea, Posma, Joram M, Ayala, Rafael, Neves, Ana L, Anwar, Maryam, Petretto, Enrico, Emanueli, Costanza, Gauguier, Dominique, Nicholson, Jeremy K, Dumas, Marc-Emmanuel
Publicado 2018

Auto-CORPus: A Natural Language Processing Tool for Standardizing and Reusing Biomedical Literature

por Beck, Tim, Shorter, Tom, Hu, Yan, Li, Zhuoyu, Sun, Shujian, Popovici, Casiana M., McQuibban, Nicholas A. R., Makraduli, Filip, Yeung, Cheng S., Rowlands, Thomas, Posma, Joram M.
Publicado 2022

Integrated Analytical and Statistical Two-Dimensional Spectroscopy Strategy for Metabolite Identification: Application to Dietary Biomarkers

por Posma, Joram M., Garcia-Perez, Isabel, Heaton, James C., Burdisso, Paula, Mathers, John C., Draper, John, Lewis, Matt, Lindon, John C., Frost, Gary, Holmes, Elaine, Nicholson, Jeremy K.
Publicado 2017

pJRES Binning Algorithm (JBA): a new method to facilitate the recovery of metabolic information from pJRES (1)H NMR spectra

por Rodriguez-Martinez, Andrea, Ayala, Rafael, Posma, Joram M, Harvey, Nikita, Jiménez, Beatriz, Sonomura, Kazuhiro, Sato, Taka-Aki, Matsuda, Fumihiko, Zalloua, Pierre, Gauguier, Dominique, Nicholson, Jeremy K, Dumas, Marc-Emmanuel
Publicado 2019

Simultaneous analysis of plasma and CSF by NMR and hierarchical models fusion

por Smolinska, Agnieszka, Posma, Joram M., Blanchet, Lionel, Ampt, Kirsten A. M., Attali, Amos, Tuinstra, Tinka, Luider, Theo, Doskocz, Marek, Michiels, Paul J., Girard, Frederic C., Buydens, Lutgarde M. C., Wijmenga, Sybren S.
Publicado 2012

Multi-omic phenotyping reveals host-microbe responses to bariatric surgery, glycaemic control and obesity

por Penney, Nicholas C., Yeung, Derek K. T., Garcia-Perez, Isabel, Posma, Joram M., Kopytek, Aleksandra, Garratt, Bethany, Ashrafian, Hutan, Frost, Gary, Marchesi, Julian R., Purkayastha, Sanjay, Hoyles, Lesley, Darzi, Ara, Holmes, Elaine
Publicado 2022

Objective assessment of dietary patterns by use of metabolic phenotyping: a randomised, controlled, crossover trial

por Garcia-Perez, Isabel, Posma, Joram M, Gibson, Rachel, Chambers, Edward S, Hansen, Tue H, Vestergaard, Henrik, Hansen, Torben, Beckmann, Manfred, Pedersen, Oluf, Elliott, Paul, Stamler, Jeremiah, Nicholson, Jeremy K, Draper, John, Mathers, John C, Holmes, Elaine, Frost, Gary
Publicado 2017

Performance of metabonomic serum analysis for diagnostics in paediatric tuberculosis

por Andreas, Nicholas J., Basu Roy, Robindra, Gomez-Romero, Maria, Horneffer-van der Sluis, Verena, Lewis, Matthew R., Camuzeaux, Stephane S. M., Jiménez, Beatriz, Posma, Joram M., Tientcheu, Leopold, Egere, Uzochukwu, Sillah, Abdou, Togun, Toyin, Holmes, Elaine, Kampmann, Beate
Publicado 2020

Diet-induced Weight Loss and Phenotypic Flexibility Among Healthy Overweight Adults: A Randomized Trial

por Rundle, Milena, Fiamoncini, Jarlei, Thomas, E Louise, Wopereis, Suzan, Afman, Lydia A., Brennan, Lorraine, Drevon, Christian A., Gundersen, Thomas E., Daniel, Hannelore, Perez, Isabel Garcia, Posma, Joram M., Ivanova, Diana G., Bell, Jimmy D., van Ommen, Ben, Frost, Gary
Publicado 2023

Integrated fecal microbiome–metabolome signatures reflect stress and serotonin metabolism in irritable bowel syndrome

por Mujagic, Zlatan, Kasapi, Melpomeni, Jonkers, Daisy MAE, Garcia-Perez, Isabel, Vork, Lisa, Weerts, Zsa Zsa R.M., Serrano-Contreras, Jose Ivan, Zhernakova, Alexandra, Kurilshikov, Alexander, Scotcher, Jamie, Holmes, Elaine, Wijmenga, Cisca, Keszthelyi, Daniel, Nicholson, Jeremy K, Posma, Joram M, Masclee, Ad AM
Publicado 2022

Blood pressure interactions with the DASH dietary pattern, sodium, and potassium: The International Study of Macro-/Micronutrients and Blood Pressure (INTERMAP)

por Chan, Queenie, Wren, Gina M, Lau, Chung-Ho E, Ebbels, Timothy M D, Gibson, Rachel, Loo, Ruey Leng, Aljuraiban, Ghadeer S, Posma, Joram M, Dyer, Alan R, Steffen, Lyn M, Rodriguez, Beatriz L, Appel, Lawrence J, Daviglus, Martha L, Elliott, Paul, Stamler, Jeremiah, Holmes, Elaine, Van Horn, Linda
Publicado 2022

Fat, Fiber and Cancer Risk in African Americans and Rural Africans

por O'Keefe, Stephen J.D., Li, Jia V., Lahti, Leo, Ou, Junhai, Carbonero, Franck, Mohammed, Khaled, Posma, Joram M, Kinross, James, Wahl, Elaine, Ruder, Elizabeth, Vipperla, Kishore, Naidoo, Vasudevan, Mtshali, Lungile, Tims, Sebastian, Puylaert, Philippe G.B., DeLany, James, Krasinskas, Alyssa, Benefiel, Ann C., Kaseb, Hatem O., Newton, Keith, Nicholson, Jeremy K., de Vos, Willem M., Gaskins, H. Rex, Zoetendal, Erwin G.
Publicado 2015

Pathobionts in the tumour microbiota predict survival following resection for colorectal cancer

por Alexander, James L., Posma, Joram M., Scott, Alasdair, Poynter, Liam, Mason, Sam E., Doria, M. Luisa, Herendi, Lili, Roberts, Lauren, McDonald, Julie A. K., Cameron, Simon, Hughes, David J., Liska, Vaclav, Susova, Simona, Soucek, Pavel, der Sluis, Verena Horneffer-van, Gomez-Romero, Maria, Lewis, Matthew R., Hoyles, Lesley, Woolston, Andrew, Cunningham, David, Darzi, Ara, Gerlinger, Marco, Goldin, Robert, Takats, Zoltan, Marchesi, Julian R., Teare, Julian, Kinross, James
Publicado 2023

Dietary metabolite profiling brings new insight into the relationship between nutrition and metabolic risk: An IMI DIRECT study

por Eriksen, Rebeca, Perez, Isabel Garcia, Posma, Joram M., Haid, Mark, Sharma, Sapna, Prehn, Cornelia, Thomas, Louise E., Koivula, Robert W., Bizzotto, Roberto, Prehn, Cornelia, Mari, Andrea, Giordano, Giuseppe N., Pavo, Imre, Schwenk, Jochen M., De Masi, Federico, Tsirigos, Konstantinos D., Brunak, Søren, Viñuela, Ana, Mahajan, Anubha, McDonald, Timothy J., Kokkola, Tarja, Rutter, Femke, Teare, Harriet, Hansen, Tue H., Fernandez, Juan, Jones, Angus, Jennison, Chris, Walker, Mark, McCarthy, Mark I., Pedersen, Oluf, Ruetten, Hartmut, Forgie, Ian, Bell, Jimmy D., Pearson, Ewan R., Franks, Paul W., Adamski, Jerzy, Holmes, Elaine, Frost, Gary
Publicado 2020