Phenome-wide functional dissection of pleiotropic effects highlights key molecular pathways for human complex traits

por Shikov, Anton E., Skitchenko, Rostislav K., Predeus, Alexander V., Barbitoff, Yury A.
Publicado 2020

Transcriptomic profiling of Escherichia coli K-12 in response to a compendium of stressors

por Bhatia, Rama P., Kirit, Hande A., Predeus, Alexander V., Bollback, Jonathan P.
Publicado 2022

Author Correction: Transcriptomic profiling of Escherichia coli K-12 in response to a compendium of stressors

por Bhatia, Rama P., Kirit, Hande A., Predeus, Alexander V., Bollback, Jonathan P.
Publicado 2022

Systematic benchmark of state-of-the-art variant calling pipelines identifies major factors affecting accuracy of coding sequence variant discovery

por Barbitoff, Yury A., Abasov, Ruslan, Tvorogova, Varvara E., Glotov, Andrey S., Predeus, Alexander V.
Publicado 2022

Long-Range Signaling in MutS and MSH Homologs via Switching of Dynamic Communication Pathways

por Wang, Beibei, Francis, Joshua, Sharma, Monika, Law, Sean M., Predeus, Alexander V., Feig, Michael
Publicado 2016

Data on RNA-seq analysis of the oviducts of five closely related species genus Littorina (Mollusca, Caenogastropoda): L. saxatilis, L. arcana, L. compressa, L. obtusata, L. fabalis

por Lobov, Arseniy A., Danilov, Lavrentii G., Masharskiy, Alexey E., Predeus, Alexander V., Mikhailova, Natalia A., Granovitch, Andrei I., Maltseva, Arina L.
Publicado 2022

Genome-wide fitness analysis identifies genes required for in vitro growth and macrophage infection by African and global epidemic pathovariants of Salmonella enterica Enteritidis

por Fong, Wai Yee, Canals, Rocío, Predeus, Alexander V., Perez-Sepulveda, Blanca, Wenner, Nicolas, Lacharme-Lora, Lizeth, Feasey, Nicholas, Wigley, Paul, Hinton, Jay C. D.
Publicado 2023

Complete Genome Sequences of African Salmonella enterica Serovar Enteritidis Clinical Isolates Associated with Bloodstream Infection

por Perez-Sepulveda, Blanca M., Predeus, Alexander V., Fong, Wai Yee, Parry, Christopher M., Cheesbrough, John, Wigley, Paul, Feasey, Nicholas A., Hinton, Jay C. D.
Publicado 2021

Species-Specific Proteins in the Oviducts of Snail Sibling Species: Proteotranscriptomic Study of Littorina fabalis and L. obtusata

por Lobov, Arseniy A., Babkina, Irina Y., Danilov, Lavrentii G., Masharskiy, Alexey E., Predeus, Alexander V., Mikhailova, Natalia A., Granovitch, Andrei I., Maltseva, Arina L.
Publicado 2021

Systematic dissection of biases in whole-exome and whole-genome sequencing reveals major determinants of coding sequence coverage

por Barbitoff, Yury A., Polev, Dmitrii E., Glotov, Andrey S., Serebryakova, Elena A., Shcherbakova, Irina V., Kiselev, Artem M., Kostareva, Anna A., Glotov, Oleg S., Predeus, Alexander V.
Publicado 2020

Intracellular niche-specific profiling reveals transcriptional adaptations required for the cytosolic lifestyle of Salmonella enterica

por Powers, TuShun R., Haeberle, Amanda L., Predeus, Alexander V., Hammarlöf, Disa L., Cundiff, Jennifer A., Saldaña-Ahuactzi, Zeus, Hokamp, Karsten, Hinton, Jay C. D., Knodler, Leigh A.
Publicado 2021

Chromosome-level genome assembly and structural variant analysis of two laboratory yeast strains from the Peterhof Genetic Collection lineage

por Barbitoff, Yury A, Matveenko, Andrew G, Matiiv, Anton B, Maksiutenko, Evgeniia M, Moskalenko, Svetlana E, Drozdova, Polina B, Polev, Dmitrii E, Beliavskaia, Alexandra Y, Danilov, Lavrentii G, Predeus, Alexander V, Zhouravleva, Galina A
Publicado 2021

Salmonella identified in pigs in Kenya and Malawi reveals the potential for zoonotic transmission in emerging pork markets

por Wilson, Catherine N., Pulford, Caisey V., Akoko, James, Perez Sepulveda, Blanca, Predeus, Alexander V., Bevington, Jessica, Duncan, Patricia, Hall, Neil, Wigley, Paul, Feasey, Nicholas, Pinchbeck, Gina, Hinton, Jay C. D., Gordon, Melita A., Fèvre, Eric M.
Publicado 2020

RNA Sequencing of Whole Blood Defines the Signature of High Intensity Exercise at Altitude in Elite Speed Skaters

por Glotov, Andrey S., Zelenkova, Irina E., Vashukova, Elena S., Shuvalova, Anna R., Zolotareva, Alexandra D., Polev, Dmitrii E., Barbitoff, Yury A., Glotov, Oleg S., Sarana, Andrey M., Shcherbak, Sergey G., Rozina, Mariya A., Gogotova, Victoria L., Predeus, Alexander V.
Publicado 2022

Whole‐exome sequencing provides insights into monogenic disease prevalence in Northwest Russia

por Barbitoff, Yury A., Skitchenko, Rostislav K., Poleshchuk, Olga I., Shikov, Anton E., Serebryakova, Elena A., Nasykhova, Yulia A., Polev, Dmitrii E., Shuvalova, Anna R., Shcherbakova, Irina V., Fedyakov, Mikhail A., Glotov, Oleg S., Glotov, Andrey S., Predeus, Alexander V.
Publicado 2019

An accessible, efficient and global approach for the large-scale sequencing of bacterial genomes

por Perez-Sepulveda, Blanca M., Heavens, Darren, Pulford, Caisey V., Predeus, Alexander V., Low, Ross, Webster, Hermione, Dykes, Gregory F., Schudoma, Christian, Rowe, Will, Lipscombe, James, Watkins, Chris, Kumwenda, Benjamin, Shearer, Neil, Costigan, Karl, Baker, Kate S., Feasey, Nicholas A., Hinton, Jay C. D., Hall, Neil
Publicado 2021

Identification of Novel Candidate Markers of Type 2 Diabetes and Obesity in Russia by Exome Sequencing with a Limited Sample Size

por Barbitoff, Yury A., Serebryakova, Elena A., Nasykhova, Yulia A., Predeus, Alexander V., Polev, Dmitrii E., Shuvalova, Anna R., Vasiliev, Evgenii V., Urazov, Stanislav P., Sarana, Andrey M., Scherbak, Sergey G., Gladyshev, Dmitrii V., Pokrovskaya, Maria S., Sivakova, Oksana V., Meshkov, Aleksey N., Drapkina, Oxana M., Glotov, Oleg S., Glotov, Andrey S.
Publicado 2018

Adding function to the genome of African Salmonella Typhimurium ST313 strain D23580

por Canals, Rocío, Hammarlöf, Disa L., Kröger, Carsten, Owen, Siân V., Fong, Wai Yee, Lacharme-Lora, Lizeth, Zhu, Xiaojun, Wenner, Nicolas, Carden, Sarah E., Honeycutt, Jared, Monack, Denise M., Kingsley, Robert A., Brownridge, Philip, Chaudhuri, Roy R., Rowe, Will P. M., Predeus, Alexander V., Hokamp, Karsten, Gordon, Melita A., Hinton, Jay C. D.
Publicado 2019

Whole-exome sequencing in Russian children with non-type 1 diabetes mellitus reveals a wide spectrum of genetic variants in MODY-related and unrelated genes

por Glotov, Oleg S., Serebryakova, Elena A., Turkunova, Mariia E., Efimova, Olga A., Glotov, Andrey S., Barbitoff, Yury A., Nasykhova, Yulia A., Predeus, Alexander V., Polev, Dmitrii E., Fedyakov, Mikhail A., Polyakova, Irina V., Ivashchenko, Tatyana E., Shved, Natalia Y., Shabanova, Elena S., Tiselko, Alena V., Romanova, Olga V., Sarana, Andrey M., Pendina, Anna A., Scherbak, Sergey G., Musina, Ekaterina V., Petrovskaia-Kaminskaia, Anastasiia V., Lonishin, Liubov R., Ditkovskaya, Liliya V., Zhelenina, Liudmila A., Tyrtova, Ludmila V., Berseneva, Olga S., Skitchenko, Rostislav K., Suspitsin, Evgenii N., Bashnina, Elena B., Baranov, Vladislav S.
Publicado 2019

Stepwise evolution of Salmonella Typhimurium ST313 causing bloodstream infection in Africa

por Pulford, Caisey V., Perez-Sepulveda, Blanca M., Canals, Rocío, Bevington, Jessica A., Bengtsson, Rebecca J., Wenner, Nicolas, Rodwell, Ella V., Kumwenda, Benjamin, Zhu, Xiaojun, Bennett, Rebecca J., Stenhouse, George E., Malaka De Silva, P., Webster, Hermione J., Bengoechea, Jose A., Dumigan, Amy, Tran-Dien, Alicia, Prakash, Reenesh, Banda, Happy C., Alufandika, Lovemore, Mautanga, Mike P., Bowers-Barnard, Arthur, Beliavskaia, Alexandra Y., Predeus, Alexander V., Rowe, Will P. M., Darby, Alistair C., Hall, Neil, Weill, François-Xavier, Gordon, Melita A., Feasey, Nicholas A., Baker, Kate S., Hinton, Jay C. D.
Publicado 2020