Dynamic Properties of Network Motifs Contribute to Biological Network Organization

por Prill, Robert J, Iglesias, Pablo A, Levchenko, Andre
Publicado 2005

Noise-Driven Causal Inference in Biomolecular Networks

por Prill, Robert J., Vogel, Robert, Cecchi, Guillermo A., Altan-Bonnet, Grégoire, Stolovitzky, Gustavo
Publicado 2015

Filthy lucre: A metagenomic pilot study of microbes found on circulating currency in New York City

por Maritz, Julia M., Sullivan, Steven A., Prill, Robert J., Aksoy, Emre, Scheid, Paul, Carlton, Jane M.
Publicado 2017

Towards a Rigorous Assessment of Systems Biology Models: The DREAM3 Challenges

por Prill, Robert J., Marbach, Daniel, Saez-Rodriguez, Julio, Sorger, Peter K., Alexopoulos, Leonidas G., Xue, Xiaowei, Clarke, Neil D., Altan-Bonnet, Gregoire, Stolovitzky, Gustavo
Publicado 2010

Correction: Towards a Rigorous Assessment of Systems Biology Models: The DREAM3 Challenges

por Prill, Robert J., Marbach, Daniel, Saez-Rodriguez, Julio, Sorger, Peter K., Alexopoulos, Leonidas G., Xue, Xiaowei, Clarke, Neil D., Altan-Bonnet, Gregoire, Stolovitzky, Gustavo
Publicado 2010

Wisdom of crowds for robust gene network inference

por Marbach, Daniel, Costello, James C., Küffner, Robert, Vega, Nicci, Prill, Robert J., Camacho, Diogo M., Allison, Kyle R., Kellis, Manolis, Collins, James J., Stolovitzky, Gustavo
Publicado 2012

A computational method for designing diverse linear epitopes including citrullinated peptides with desired binding affinities to intravenous immunoglobulin

por Patro, Rob, Norel, Raquel, Prill, Robert J., Saez-Rodriguez, Julio, Lorenz, Peter, Steinbeck, Felix, Ziems, Bjoern, Luštrek, Mitja, Barbarini, Nicola, Tiengo, Alessandra, Bellazzi, Riccardo, Thiesen, Hans-Jürgen, Stolovitzky, Gustavo, Kingsford, Carl
Publicado 2016

Food authentication from shotgun sequencing reads with an application on high protein powders

por Haiminen, Niina, Edlund, Stefan, Chambliss, David, Kunitomi, Mark, Weimer, Bart C., Ganesan, Balasubramanian, Baker, Robert, Markwell, Peter, Davis, Matthew, Huang, B. Carol, Kong, Nguyet, Prill, Robert J., Marlowe, Carl H., Quintanar, André, Pierre, Sophie, Dubois, Geraud, Kaufman, James H., Parida, Laxmi, Beck, Kristen L.
Publicado 2019

Comprehensive benchmarking and ensemble approaches for metagenomic classifiers

por McIntyre, Alexa B. R., Ounit, Rachid, Afshinnekoo, Ebrahim, Prill, Robert J., Hénaff, Elizabeth, Alexander, Noah, Minot, Samuel S., Danko, David, Foox, Jonathan, Ahsanuddin, Sofia, Tighe, Scott, Hasan, Nur A., Subramanian, Poorani, Moffat, Kelly, Levy, Shawn, Lonardi, Stefano, Greenfield, Nick, Colwell, Rita R., Rosen, Gail L., Mason, Christopher E.
Publicado 2017

Correction to: Comprehensive benchmarking and ensemble approaches for metagenomic classifiers

por McIntyre, Alexa B. R., Ounit, Rachid, Afshinnekoo, Ebrahim, Prill, Robert J., Hénaff, Elizabeth, Alexander, Noah, Minot, Samuel S., Danko, David, Foox, Jonathan, Ahsanuddin, Sofia, Tighe, Scott, Hasan, Nur A., Subramanian, Poorani, Moffat, Kelly, Levy, Shawn, Lonardi, Stefano, Greenfield, Nick, Colwell, Rita R., Rosen, Gail L., Mason, Christopher E.
Publicado 2019

Monitoring the microbiome for food safety and quality using deep shotgun sequencing

por Beck, Kristen L., Haiminen, Niina, Chambliss, David, Edlund, Stefan, Kunitomi, Mark, Huang, B. Carol, Kong, Nguyet, Ganesan, Balasubramanian, Baker, Robert, Markwell, Peter, Kawas, Ban, Davis, Matthew, Prill, Robert J., Krishnareddy, Harsha, Seabolt, Ed, Marlowe, Carl H., Pierre, Sophie, Quintanar, André, Parida, Laxmi, Dubois, Geraud, Kaufman, James, Weimer, Bart C.
Publicado 2021

DREAMTools: a Python package for scoring collaborative challenges

por Cokelaer, Thomas, Bansal, Mukesh, Bare, Christopher, Bilal, Erhan, Bot, Brian M., Chaibub Neto, Elias, Eduati, Federica, de la Fuente, Alberto, Gönen, Mehmet, Hill, Steven M., Hoff, Bruce, Karr, Jonathan R., Küffner, Robert, Menden, Michael P., Meyer, Pablo, Norel, Raquel, Pratap, Abhishek, Prill, Robert J., Weirauch, Matthew T., Costello, James C., Stolovitzky, Gustavo, Saez-Rodriguez, Julio
Publicado 2016

Geospatial Resolution of Human and Bacterial Diversity with City-Scale Metagenomics

por Afshinnekoo, Ebrahim, Meydan, Cem, Chowdhury, Shanin, Jaroudi, Dyala, Boyer, Collin, Bernstein, Nick, Maritz, Julia M., Reeves, Darryl, Gandara, Jorge, Chhangawala, Sagar, Ahsanuddin, Sofia, Simmons, Amber, Nessel, Timothy, Sundaresh, Bharathi, Pereira, Elizabeth, Jorgensen, Ellen, Kolokotronis, Sergios-Orestis, Kirchberger, Nell, Garcia, Isaac, Gandara, David, Dhanraj, Sean, Nawrin, Tanzina, Saletore, Yogesh, Alexander, Noah, Vijay, Priyanka, Hénaff, Elizabeth M., Zumbo, Paul, Walsh, Michael, O’Mullan, Gregory D., Tighe, Scott, Dudley, Joel T., Dunaif, Anya, Ennis, Sean, O’Halloran, Eoghan, Magalhaes, Tiago R., Boone, Braden, Jones, Angela L., Muth, Theodore R., Paolantonio, Katie Schneider, Alter, Elizabeth, Schadt, Eric E., Garbarino, Jeanne, Prill, Robert J., Carlton, Jane M., Levy, Shawn, Mason, Christopher E.
Publicado 2015

A communal catalogue reveals Earth’s multiscale microbial diversity

por Thompson, Luke R., Sanders, Jon G., McDonald, Daniel, Amir, Amnon, Ladau, Joshua, Locey, Kenneth J., Prill, Robert J., Tripathi, Anupriya, Gibbons, Sean M., Ackermann, Gail, Navas-Molina, Jose A., Janssen, Stefan, Kopylova, Evguenia, Vázquez-Baeza, Yoshiki, González, Antonio, Morton, James T., Mirarab, Siavash, Zech Xu, Zhenjiang, Jiang, Lingjing, Haroon, Mohamed F., Kanbar, Jad, Zhu, Qiyun, Jin Song, Se, Kosciolek, Tomasz, Bokulich, Nicholas A., Lefler, Joshua, Brislawn, Colin J., Humphrey, Gregory, Owens, Sarah M., Hampton-Marcell, Jarrad, Berg-Lyons, Donna, McKenzie, Valerie, Fierer, Noah, Fuhrman, Jed A., Clauset, Aaron, Stevens, Rick L., Shade, Ashley, Pollard, Katherine S., Goodwin, Kelly D., Jansson, Janet K., Gilbert, Jack A., Knight, Rob
Publicado 2017