Murine leukemia viruses (MuLV) and Xenotropic MuLV-related viruses exhibit inter-tropic complex recombination patterns

por Prosperi, Mattia C F, Switzer, William M, Heneine, Walid, Salemi, Marco
Publicado 2011

Challenges in interpreting allergen microarrays in relation to clinical symptoms: A machine learning approach

por Prosperi, Mattia C F, Belgrave, Danielle, Buchan, Iain, Simpson, Angela, Custovic, Adnan
Publicado 2014

PhyloTempo: A Set of R Scripts for Assessing and Visualizing Temporal Clustering in Genealogies Inferred from Serially Sampled Viral Sequences

por Norström, Melissa M., Prosperi, Mattia C.F., Gray, Rebecca R., Karlsson, Annika C., Salemi, Marco
Publicado 2012

Empirical validation of viral quasispecies assembly algorithms: state-of-the-art and challenges

por Prosperi, Mattia C. F., Yin, Li, Nolan, David J., Lowe, Amanda D., Goodenow, Maureen M., Salemi, Marco
Publicado 2013

The Threshold Bootstrap Clustering: A New Approach to Find Families or Transmission Clusters within Molecular Quasispecies

por Prosperi, Mattia C. F., De Luca, Andrea, Di Giambenedetto, Simona, Bracciale, Laura, Fabbiani, Massimiliano, Cauda, Roberto, Salemi, Marco
Publicado 2010

Molecular Epidemiology of HIV-1 Subtype B Infection across Florida Reveals Few Large Superclusters with Metropolitan Origin

por Rich, Shannan N., Prosperi, Mattia C. F., Dellicour, Simon, Vrancken, Bram, Cook, Robert L., Spencer, Emma C., Salemi, Marco, Mavian, Carla
Publicado 2022

Can Linear Regression Modeling Help Clinicians in the Interpretation of Genotypic Resistance Data? An Application to Derive a Lopinavir-Score

por Cozzi-Lepri, Alessandro, Prosperi, Mattia C. F., Kjær, Jesper, Dunn, David, Paredes, Roger, Sabin, Caroline A., Lundgren, Jens D., Phillips, Andrew N., Pillay, Deenan
Publicado 2011

Emergence of recombinant Mayaro virus strains from the Amazon basin

por Mavian, Carla, Rife, Brittany D., Dollar, James Jarad, Cella, Eleonora, Ciccozzi, Massimo, Prosperi, Mattia C. F., Lednicky, John, Morris, J. Glenn, Capua, Ilaria, Salemi, Marco
Publicado 2017

Antiretroviral Therapy Optimisation without Genotype Resistance Testing: A Perspective on Treatment History Based Models

por Prosperi, Mattia C. F., Rosen-Zvi, Michal, Altmann, André, Zazzi, Maurizio, Di Giambenedetto, Simona, Kaiser, Rolf, Schülter, Eugen, Struck, Daniel, Sloot, Peter, van de Vijver, David A., Vandamme, Anne-Mieke, Sönnerborg, Anders
Publicado 2010

Correction: Antiretroviral Therapy Optimisation without Genotype Resistance Testing: A Perspective on Treatment History Based Models

por Prosperi, Mattia C. F., Rosen-Zvi, Michal, Altmann, André, Zazzi, Maurizio, Di Giambenedetto, Simona, Kaiser, Rolf, Schülter, Eugen, Struck, Daniel, Sloot, Peter, van de Vijver, David A., Vandamme, Anne-Mieke, Sönnerborg, Anders
Publicado 2011

Brain tissue transcriptomic analysis of SIV-infected macaques identifies several altered metabolic pathways linked to neuropathogenesis and poly (ADP-ribose) polymerases (PARPs) as...

por Mavian, Carla, Ramirez-Mata, Andrea S., Dollar, James Jarad, Nolan, David J., Cash, Melanie, White, Kevin, Rich, Shannan N., Magalis, Brittany Rife, Marini, Simone, Prosperi, Mattia C. F., Amador, David Moraga, Riva, Alberto, Williams, Kenneth C., Salemi, Marco
Publicado 2021

A novel methodology for large-scale phylogeny partition

por Prosperi, Mattia C.F., Ciccozzi, Massimo, Fanti, Iuri, Saladini, Francesco, Pecorari, Monica, Borghi, Vanni, Di Giambenedetto, Simona, Bruzzone, Bianca, Capetti, Amedeo, Vivarelli, Angela, Rusconi, Stefano, Re, Maria Carla, Gismondo, Maria Rita, Sighinolfi, Laura, Gray, Rebecca R., Salemi, Marco, Zazzi, Maurizio, De Luca, Andrea
Publicado 2011