Re-Assembly of the Genome of Francisella tularensis Subsp. holarctica OSU18

por Puiu, Daniela, Salzberg, Steven L.
Publicado 2008

Gene-Boosted Assembly of a Novel Bacterial Genome from Very Short Reads

por Salzberg, Steven L., Sommer, Daniel D., Puiu, Daniela, Lee, Vincent T.
Publicado 2008

A First Insight into the Genome of the Filter-Feeder Mussel Mytilus galloprovincialis

por Murgarella, Maria, Puiu, Daniela, Novoa, Beatriz, Figueras, Antonio, Posada, David, Canchaya, Carlos
Publicado 2016

Correction: A First Insight into the Genome of the Filter-Feeder Mussel Mytilus galloprovincialis

por Murgarella, Maria, Puiu, Daniela, Novoa, Beatriz, Figueras, Antonio, Posada, David, Canchaya, Carlos
Publicado 2016

The first near-complete assembly of the hexaploid bread wheat genome, Triticum aestivum

por Zimin, Aleksey V, Puiu, Daniela, Hall, Richard, Kingan, Sarah, Clavijo, Bernardo J, Salzberg, Steven L
Publicado 2017

The genome of the American groundhog, Marmota monax

por Puiu, Daniela, Zimin, Aleksey, Shumate, Alaina, Ge, Yuchen, Qiu, Jiabin, Bhaskaran, Manoj, Salzberg, Steven L.
Publicado 2020

New Assembly, Reannotation and Analysis of the Entamoeba histolytica Genome Reveal New Genomic Features and Protein Content Information

por Lorenzi, Hernan A., Puiu, Daniela, Miller, Jason R., Brinkac, Lauren M., Amedeo, Paolo, Hall, Neil, Caler, Elisabet V.
Publicado 2010

GAGE-B: an evaluation of genome assemblers for bacterial organisms

por Magoc, Tanja, Pabinger, Stephan, Canzar, Stefan, Liu, Xinyue, Su, Qi, Puiu, Daniela, Tallon, Luke J., Salzberg, Steven L.
Publicado 2013

Long-Term Air Pollution Exposure and Mitochondrial DNA Copy Number: An Analysis of UK Biobank Data

por Hong, Yun Soo, Battle, Stephanie L., Puiu, Daniela, Shi, Wen, Pankratz, Nathan, Zhao, Di, Arking, Dan E., Guallar, Eliseo
Publicado 2023

Major data analysis errors invalidate cancer microbiome findings

por Gihawi, Abraham, Ge, Yuchen, Lu, Jennifer, Puiu, Daniela, Xu, Amanda, Cooper, Colin S., Brewer, Daniel S., Pertea, Mihaela, Salzberg, Steven L.
Publicado 2023

Major data analysis errors invalidate cancer microbiome findings

por Gihawi, Abraham, Ge, Yuchen, Lu, Jennifer, Puiu, Daniela, Xu, Amanda, Cooper, Colin S., Brewer, Daniel S., Pertea, Mihaela, Salzberg, Steven L.
Publicado 2023

Hybrid assembly of the large and highly repetitive genome of Aegilops tauschii, a progenitor of bread wheat, with the MaSuRCA mega-reads algorithm

por Zimin, Aleksey V., Puiu, Daniela, Luo, Ming-Cheng, Zhu, Tingting, Koren, Sergey, Marçais, Guillaume, Yorke, James A., Dvořák, Jan, Salzberg, Steven L.
Publicado 2017

First Draft Assembly and Annotation of the Genome of a California Endemic Oak Quercus lobata Née (Fagaceae)

por Sork, Victoria L., Fitz-Gibbon, Sorel T., Puiu, Daniela, Crepeau, Marc, Gugger, Paul F., Sherman, Rachel, Stevens, Kristian, Langley, Charles H., Pellegrini, Matteo, Salzberg, Steven L.
Publicado 2016

An improved assembly of the loblolly pine mega-genome using long-read single-molecule sequencing

por Zimin, Aleksey V., Stevens, Kristian A., Crepeau, Marc W., Puiu, Daniela, Wegrzyn, Jill L., Yorke, James A., Langley, Charles H., Neale, David B., Salzberg, Steven L.
Publicado 2017

Erratum to: An improved assembly of the loblolly pine mega-genome using long-read single-molecule sequencing

por Zimin, Aleksey V., Stevens, Kristian A., Crepeau, Marc W., Puiu, Daniela, Wegrzyn, Jill L., Yorke, James A., Langley, Charles H., Neale, David B., Salzberg, Steven L.
Publicado 2017

Assembly and annotation of an Ashkenazi human reference genome

por Shumate, Alaina, Zimin, Aleksey V., Sherman, Rachel M., Puiu, Daniela, Wagner, Justin M., Olson, Nathan D., Pertea, Mihaela, Salit, Marc L., Zook, Justin M., Salzberg, Steven L.
Publicado 2020

Dissecting the Polygenic Basis of Cold Adaptation Using Genome-Wide Association of Traits and Environmental Data in Douglas-fir

por De La Torre, Amanda R., Wilhite, Benjamin, Puiu, Daniela, St. Clair, John Bradley, Crepeau, Marc W., Salzberg, Steven L., Langley, Charles H., Allen, Brian, Neale, David B.
Publicado 2021

A bioinformatics pipeline for estimating mitochondrial DNA copy number and heteroplasmy levels from whole genome sequencing data

por Battle, Stephanie L, Puiu, Daniela, Verlouw, Joost, Broer, Linda, Boerwinkle, Eric, Taylor, Kent D, Rotter, Jerome I, Rich, Stephan S, Grove, Megan L, Pankratz, Nathan, Fetterman, Jessica L, Liu, Chunyu, Arking, Dan E
Publicado 2022

CHESS 3: an improved, comprehensive catalog of human genes and transcripts based on large-scale expression data, phylogenetic analysis, and protein structure

por Varabyou, Ales, Sommer, Markus J., Erdogdu, Beril, Shinder, Ida, Minkin, Ilia, Chao, Kuan-Hao, Park, Sukhwan, Heinz, Jakob, Pockrandt, Christopher, Shumate, Alaina, Rincon, Natalia, Puiu, Daniela, Steinegger, Martin, Salzberg, Steven L., Pertea, Mihaela
Publicado 2023

High-quality genome and methylomes illustrate features underlying evolutionary success of oaks

por Sork, Victoria L., Cokus, Shawn J., Fitz-Gibbon, Sorel T., Zimin, Aleksey V., Puiu, Daniela, Garcia, Jesse A., Gugger, Paul F., Henriquez, Claudia L., Zhen, Ying, Lohmueller, Kirk E., Pellegrini, Matteo, Salzberg, Steven L.
Publicado 2022