The Rough Guide to In Silico Function Prediction, or How To Use Sequence and Structure Information To Predict Protein Function

por Punta, Marco, Ofran, Yanay
Publicado 2008

Correction: The Rough Guide to In Silico Function Prediction, or How To Use Sequence and Structure Information To Predict Protein Function

por Punta, Marco, Ofran, Yanay
Publicado 2008

Density Peak clustering of protein sequences associated to a Pfam clan reveals clear similarities and interesting differences with respect to manual family annotation

por Russo, Elena Tea, Laio, Alessandro, Punta, Marco
Publicado 2021

An estimated 5% of new protein structures solved today represent a new Pfam family

por Mistry, Jaina, Kloppmann, Edda, Rost, Burkhard, Punta, Marco
Publicado 2013

The SHOCT Domain: A Widespread Domain Under-Represented in Model Organisms

por Eberhardt, Ruth Y., Bartholdson, S. Josefin, Punta, Marco, Bateman, Alex
Publicado 2013

Improved Disorder Prediction by Combination of Orthogonal Approaches

por Schlessinger, Avner, Punta, Marco, Yachdav, Guy, Kajan, Laszlo, Rost, Burkhard
Publicado 2009

The Immunogenic Potential of Recurrent Cancer Drug Resistance Mutations: An In Silico Study

por Punta, Marco, Jennings, Victoria A., Melcher, Alan A., Lise, Stefano
Publicado 2020

Challenges in homology search: HMMER3 and convergent evolution of coiled-coil regions

por Mistry, Jaina, Finn, Robert D., Eddy, Sean R., Bateman, Alex, Punta, Marco
Publicado 2013

Structure and sequence analyses of Bacteroides proteins BVU_4064 and BF1687 reveal presence of two novel predominantly-beta domains, predicted to be involved in lipid and cell surf...

por Natarajan, Padmaja, Punta, Marco, Kumar, Abhinav, Yeh, Andrew P, Godzik, Adam, Aravind, L
Publicado 2015

DPCfam: Unsupervised protein family classification by Density Peak Clustering of large sequence datasets

por Russo, Elena Tea, Barone, Federico, Bateman, Alex, Cozzini, Stefano, Punta, Marco, Laio, Alessandro
Publicado 2022

AntiFam: a tool to help identify spurious ORFs in protein annotation

por Eberhardt, Ruth Y., Haft, Daniel H., Punta, Marco, Martin, Maria, O'Donovan, Claire, Bateman, Alex
Publicado 2012

Structural genomics target selection for the New York consortium on membrane protein structure

por Punta, Marco, Love, James, Handelman, Samuel, Hunt, John F., Shapiro, Lawrence, Hendrickson, Wayne A., Rost, Burkhard
Publicado 2009

The complexity, challenges and benefits of comparing two transporter classification systems in TCDB and Pfam

por Chiang, Zachary, Vastermark, Ake, Punta, Marco, Coggill, Penelope C., Mistry, Jaina, Finn, Robert D., Saier, Milton H.
Publicado 2015

The challenge of increasing Pfam coverage of the human proteome

por Mistry, Jaina, Coggill, Penny, Eberhardt, Ruth Y., Deiana, Antonio, Giansanti, Andrea, Finn, Robert D., Bateman, Alex, Punta, Marco
Publicado 2013

The challenge of increasing Pfam coverage of the human proteome

por Mistry, Jaina, Coggill, Penny, Eberhardt, Ruth Y., Deiana, Antonio, Giansanti, Andrea, Finn, Robert D., Bateman, Alex, Punta, Marco
Publicado 2013

New mini- zincin structures provide a minimal scaffold for members of this metallopeptidase superfamily

por Trame, Christine B, Chang, Yuanyuan, Axelrod, Herbert L, Eberhardt, Ruth Y, Coggill, Penelope, Punta, Marco, Rawlings, Neil D
Publicado 2014

Solution NMR structures of proteins VPA0419 from Vibrio parahaemolyticus and yiiS from Shigella flexneri provide structural coverage for protein domain family PFAM 04175

por Singarapu, Kiran Kumar, Mills, Jeffrey L, Xiao, Rong, Acton, Thomas, Punta, Marco, Fischer, Markus, Honig, Barry, Rost, Burkhard, Montelione, Gaetano T, Szyperski, Thomas
Publicado 2010

Homolog Structure of the SLAC1 Anion Channel for Closing Stomata in Leaves

por Chen, Yuhang, Hu, Lei, Punta, Marco, Bruni, Renato, Hillerich, Brandan, Kloss, Brian, Rost, Burkhard, Love, James, Siegelbaum, Steven A., Hendrickson, Wayne A.
Publicado 2010

Identification of single nucleotide variants using position-specific error estimation in deep sequencing data

por Kleftogiannis, Dimitrios, Punta, Marco, Jayaram, Anuradha, Sandhu, Shahneen, Wong, Stephen Q., Gasi Tandefelt, Delila, Conteduca, Vincenza, Wetterskog, Daniel, Attard, Gerhardt, Lise, Stefano
Publicado 2019

NMR Structure of Lipoprotein YxeF from Bacillus subtilis Reveals a Calycin Fold and Distant Homology with the Lipocalin Blc from Escherichia coli

por Wu, Yibing, Punta, Marco, Xiao, Rong, Acton, Thomas B., Sathyamoorthy, Bharathwaj, Dey, Fabian, Fischer, Markus, Skerra, Arne, Rost, Burkhard, Montelione, Gaetano T., Szyperski, Thomas
Publicado 2012