A curated benchmark of enhancer-gene interactions for evaluating enhancer-target gene prediction methods

por Moore, Jill E., Pratt, Henry E., Purcaro, Michael J., Weng, Zhiping
Publicado 2020

Annotation of chromatin states in 66 complete mouse epigenomes during development

por van der Velde, Arjan, Fan, Kaili, Tsuji, Junko, Moore, Jill E., Purcaro, Michael J., Pratt, Henry E., Weng, Zhiping
Publicado 2021

Factorbook: an updated catalog of transcription factor motifs and candidate regulatory motif sites

por Pratt, Henry E, Andrews, Gregory R, Phalke, Nishigandha, Huey, Jack D, Purcaro, Michael J, van der Velde, Arjan, Moore, Jill E, Weng, Zhiping
Publicado 2021

Differential analysis of chromatin accessibility and histone modifications for predicting mouse developmental enhancers

por Fu, Shaliu, Wang, Qin, Moore, Jill E, Purcaro, Michael J, Pratt, Henry E, Fan, Kaili, Gu, Cuihua, Jiang, Cizhong, Zhu, Ruixin, Kundaje, Anshul, Lu, Aiping, Weng, Zhiping
Publicado 2018

Space-time wiring specificity supports direction selectivity in the retina

por Kim, Jinseop S., Greene, Matthew J., Zlateski, Aleksandar, Lee, Kisuk, Richardson, Mark, Turaga, Srinivas C., Purcaro, Michael, Balkam, Matthew, Robinson, Amy, Behabadi, Bardia F., Campos, Michael, Denk, Winfried, Seung, H. Sebastian
Publicado 2014

Expanded encyclopaedias of DNA elements in the human and mouse genomes

por Moore, Jill E., Purcaro, Michael J., Pratt, Henry E., Epstein, Charles B., Shoresh, Noam, Adrian, Jessika, Kawli, Trupti, Davis, Carrie A., Dobin, Alexander, Kaul, Rajinder, Halow, Jessica, Van Nostrand, Eric L., Freese, Peter, Gorkin, David U., Shen, Yin, He, Yupeng, Mackiewicz, Mark, Pauli-Behn, Florencia, Williams, Brian A., Mortazavi, Ali, Keller, Cheryl A., Zhang, Xiao-Ou, Elhajjajy, Shaimae I., Huey, Jack, Dickel, Diane E., Snetkova, Valentina, Wei, Xintao, Wang, Xiaofeng, Rivera-Mulia, Juan Carlos, Rozowsky, Joel, Zhang, Jing, Chhetri, Surya B., Zhang, Jialing, Victorsen, Alec, White, Kevin P., Visel, Axel, Yeo, Gene W., Burge, Christopher B., Lécuyer, Eric, Gilbert, David M., Dekker, Job, Rinn, John, Mendenhall, Eric M., Ecker, Joseph R., Kellis, Manolis, Klein, Robert J., Noble, William S., Kundaje, Anshul, Guigó, Roderic, Farnham, Peggy J., Cherry, J. Michael, Myers, Richard M., Ren, Bing, Graveley, Brenton R., Gerstein, Mark B., Pennacchio, Len A., Snyder, Michael P., Bernstein, Bradley E., Wold, Barbara, Hardison, Ross C., Gingeras, Thomas R., Stamatoyannopoulos, John A., Weng, Zhiping
Publicado 2020

Author Correction: Expanded encyclopaedias of DNA elements in the human and mouse genomes

por Moore, Jill E., Purcaro, Michael J., Pratt, Henry E., Epstein, Charles B., Shoresh, Noam, Adrian, Jessika, Kawli, Trupti, Davis, Carrie A., Dobin, Alexander, Kaul, Rajinder, Halow, Jessica, Van Nostrand, Eric L., Freese, Peter, Gorkin, David U., Shen, Yin, He, Yupeng, Mackiewicz, Mark, Pauli-Behn, Florencia, Williams, Brian A., Mortazavi, Ali, Keller, Cheryl A., Zhang, Xiao-Ou, Elhajjajy, Shaimae I., Huey, Jack, Dickel, Diane E., Snetkova, Valentina, Wei, Xintao, Wang, Xiaofeng, Rivera-Mulia, Juan Carlos, Rozowsky, Joel, Zhang, Jing, Chhetri, Surya B., Zhang, Jialing, Victorsen, Alec, White, Kevin P., Visel, Axel, Yeo, Gene W., Burge, Christopher B., Lécuyer, Eric, Gilbert, David M., Dekker, Job, Rinn, John, Mendenhall, Eric M., Ecker, Joseph R., Kellis, Manolis, Klein, Robert J., Noble, William S., Kundaje, Anshul, Guigó, Roderic, Farnham, Peggy J., Cherry, J. Michael, Myers, Richard M., Ren, Bing, Graveley, Brenton R., Gerstein, Mark B., Pennacchio, Len A., Snyder, Michael P., Bernstein, Bradley E., Wold, Barbara, Hardison, Ross C., Gingeras, Thomas R., Stamatoyannopoulos, John A., Weng, Zhiping
Publicado 2022