Entities, relations, events: representing biomolecular semantics

por Pyysalo, Sampo
Publicado 2010

Anatomical entity mention recognition at literature scale

por Pyysalo, Sampo, Ananiadou, Sophia
Publicado 2014

Event extraction on PubMed scale

por Ginter, Filip, Björne, Jari, Pyysalo, Sampo
Publicado 2010

Dependency parsing of biomedical text with BERT

por Kanerva, Jenna, Ginter, Filip, Pyysalo, Sampo
Publicado 2020

An analysis of gene/protein associations at PubMed scale

por Pyysalo, Sampo, Ohta, Tomoko, Tsujii, Jun’ichi
Publicado 2011

Lexical adaptation of link grammar to the biomedical sublanguage: a comparative evaluation of three approaches

por Pyysalo, Sampo, Salakoski, Tapio, Aubin, Sophie, Nazarenko, Adeline
Publicado 2006

BioCause: Annotating and analysing causality in the biomedical domain

por Mihăilă, Claudiu, Ohta, Tomoko, Pyysalo, Sampo, Ananiadou, Sophia
Publicado 2013

Wide coverage biomedical event extraction using multiple partially overlapping corpora

por Miwa, Makoto, Pyysalo, Sampo, Ohta, Tomoko, Ananiadou, Sophia
Publicado 2013

A neural network multi-task learning approach to biomedical named entity recognition

por Crichton, Gamal, Pyysalo, Sampo, Chiu, Billy, Korhonen, Anna
Publicado 2017

Bio-SimVerb and Bio-SimLex: wide-coverage evaluation sets of word similarity in biomedicine

por Chiu, Billy, Pyysalo, Sampo, Vulić, Ivan, Korhonen, Anna
Publicado 2018

Neural networks for link prediction in realistic biomedical graphs: a multi-dimensional evaluation of graph embedding-based approaches

por Crichton, Gamal, Guo, Yufan, Pyysalo, Sampo, Korhonen, Anna
Publicado 2018

Event extraction for DNA methylation

por Ohta, Tomoko, Pyysalo, Sampo, Miwa, Makoto, Tsujii, Jun’ichi
Publicado 2011

Generalising semantic category disambiguation with large lexical resources for fun and profit

por Stenetorp, Pontus, Pyysalo, Sampo, Ananiadou, Sophia, Tsujii, Jun’ichi
Publicado 2014

Complex event extraction at PubMed scale

por Björne, Jari, Ginter, Filip, Pyysalo, Sampo, Tsujii, Jun'ichi, Salakoski, Tapio
Publicado 2010

Comparative analysis of five protein-protein interaction corpora

por Pyysalo, Sampo, Airola, Antti, Heimonen, Juho, Björne, Jari, Ginter, Filip, Salakoski, Tapio
Publicado 2008

All-paths graph kernel for protein-protein interaction extraction with evaluation of cross-corpus learning

por Airola, Antti, Pyysalo, Sampo, Björne, Jari, Pahikkala, Tapio, Ginter, Filip, Salakoski, Tapio
Publicado 2008

Investigating heterogeneous protein annotations toward cross-corpora utilization

por Wang, Yue, Kim, Jin-Dong, Sætre, Rune, Pyysalo, Sampo, Tsujii, Jun'ichi
Publicado 2009

BioInfer: a corpus for information extraction in the biomedical domain

por Pyysalo, Sampo, Ginter, Filip, Heimonen, Juho, Björne, Jari, Boberg, Jorma, Järvinen, Jouni, Salakoski, Tapio
Publicado 2007

Event extraction across multiple levels of biological organization

por Pyysalo, Sampo, Ohta, Tomoko, Miwa, Makoto, Cho, Han-Cheol, Tsujii, Jun'ichi, Ananiadou, Sophia
Publicado 2012

A neural classification method for supporting the creation of BioVerbNet

por Chiu, Billy, Majewska, Olga, Pyysalo, Sampo, Wey, Laura, Stenius, Ulla, Korhonen, Anna, Palmer, Martha
Publicado 2019