A review of the taxonomic diversity, host–parasite interactions, and experimental research on chytrids that parasitize diatoms

por Danz, August, Quandt, C. Alisha
Publicado 2023

Improving Fungal Cultivability for Natural Products Discovery

por Rämä, Teppo, Quandt, C. Alisha
Publicado 2021

A growing pandemic: A review of Nosema parasites in globally distributed domesticated and native bees

por Grupe, Arthur C., Quandt, C. Alisha
Publicado 2020

The genome of the truffle-parasite Tolypocladium ophioglossoides and the evolution of antifungal peptaibiotics

por Quandt, C. Alisha, Bushley, Kathryn E., Spatafora, Joseph W.
Publicado 2015

Differential Expression of Genes Involved in Host Recognition, Attachment, and Degradation in the Mycoparasite Tolypocladium ophioglossoides

por Quandt, C. Alisha, Di, Yanming, Elser, Justin, Jaiswal, Pankaj, Spatafora, Joseph W.
Publicado 2016

The genome of an intranuclear parasite, Paramicrosporidium saccamoebae, reveals alternative adaptations to obligate intracellular parasitism

por Quandt, C Alisha, Beaudet, Denis, Corsaro, Daniele, Walochnik, Julia, Michel, Rolf, Corradi, Nicolas, James, Timothy Y
Publicado 2017

Protocol for single-cell isolation and genome amplification of environmental microbial eukaryotes for genomic analysis

por Ciobanu, Doina, Chan, Sandy, Ahrendt, Steven, Quandt, C. Alisha, Benny, Gerald L., Smith, Matthew E., James, Timothy Y., Cheng, Jan-Fang
Publicado 2022

New 1F1N Species Combinations in Ophiocordycipitaceae (Hypocreales)

por Spatafora, Joseph W., Quandt, C. Alisha, Kepler, Ryan M., Sung, Gi-Ho, Shrestha, Bhushan, Hywel-Jones, Nigel L., Luangsa-ard, J. Jennifer
Publicado 2015

A combined microscopy and single-cell sequencing approach reveals the ecology, morphology, and phylogeny of uncultured lineages of zoosporic fungi

por Seto, Kensuke, Simmons, D. Rabern, Quandt, C. Alisha, Frenken, Thijs, Dirks, Alden C., Clemons, Rebecca A., McKindles, Katelyn M., McKay, R. Michael L., James, Timothy Y.
Publicado 2023

Leveraging single-cell genomics to expand the fungal tree of life

por Ahrendt, Steven R., Quandt, C. Alisha, Ciobanu, Doina, Clum, Alicia, Salamov, Asaf, Andreopoulos, Bill, Cheng, Jan-Fang, Woyke, Tanja, Pelin, Adrian, Henrissat, Bernard, Reynolds, Nicole K., Benny, Gerald L., Smith, Matthew E., James, Timothy Y., Grigoriev, Igor V.
Publicado 2018

A phylogenetically-based nomenclature for Cordycipitaceae (Hypocreales)

por Kepler, Ryan M., Luangsa-ard, J. Jennifer, Hywel-Jones, Nigel L., Quandt, C. Alisha, Sung, Gi-Ho, Rehner, Stephen A., Aime, M. Catherine, Henkel, Terry W., Sanjuan, Tatiana, Zare, Rasoul, Chen, Mingjun, Li, Zhengzhi, Rossman, Amy Y., Spatafora, Joseph W., Shrestha, Bhushan
Publicado 2017

Fungi in the Marine Environment: Open Questions and Unsolved Problems

por Amend, Anthony, Burgaud, Gaetan, Cunliffe, Michael, Edgcomb, Virginia P., Ettinger, Cassandra L., Gutiérrez, M. H., Heitman, Joseph, Hom, Erik F. Y., Ianiri, Giuseppe, Jones, Adam C., Kagami, Maiko, Picard, Kathryn T., Quandt, C. Alisha, Raghukumar, Seshagiri, Riquelme, Mertixell, Stajich, Jason, Vargas-Muñiz, José, Walker, Allison K., Yarden, Oded, Gladfelter, Amy S.
Publicado 2019

Phylogenetic-based nomenclatural proposals for Ophiocordycipitaceae (Hypocreales) with new combinations in Tolypocladium

por Quandt, C. Alisha, Kepler, Ryan M., Gams, Walter, Araújo, João P. M., Ban, Sayaka, Evans, Harry C., Hughes, David, Humber, Richard, Hywel-Jones, Nigel, Li, Zengzhi, Luangsa-ard, J. Jennifer, Rehner, Stephen A., Sanjuan, Tatiana, Sato, Hiroki, Shrestha, Bhushan, Sung, Gi-Ho, Yao, Yi-Jian, Zare, Rasoul, Spatafora, Joseph W.
Publicado 2014

A single-cell genomics pipeline for environmental microbial eukaryotes

por Ciobanu, Doina, Clum, Alicia, Ahrendt, Steven, Andreopoulos, William B., Salamov, Asaf, Chan, Sandy, Quandt, C. Alisha, Foster, Brian, Meier-Kolthoff, Jan P., Tang, Yung Tsu, Schwientek, Patrick, Benny, Gerald L., Smith, Matthew E., Bauer, Diane, Deshpande, Shweta, Barry, Kerrie, Copeland, Alex, Singer, Steven W., Woyke, Tanja, Grigoriev, Igor V., James, Timothy Y., Cheng, Jan-Fang
Publicado 2021

Diploid-dominant life cycles characterize the early evolution of Fungi

por Amses, Kevin R., Simmons, D. Rabern, Longcore, Joyce E., Mondo, Stephen J., Seto, Kensuke, Jerônimo, Gustavo H., Bonds, Anne E., Quandt, C. Alisha, Davis, William J., Chang, Ying, Federici, Brian A., Kuo, Alan, LaButti, Kurt, Pangilinan, Jasmyn, Andreopoulos, William, Tritt, Andrew, Riley, Robert, Hundley, Hope, Johnson, Jenifer, Lipzen, Anna, Barry, Kerrie, Lang, B. Franz, Cuomo, Christina A., Buchler, Nicolas E., Grigoriev, Igor V., Spatafora, Joseph W., Stajich, Jason E., James, Timothy Y.
Publicado 2022

Ectomycorrhizal ecology is imprinted in the genome of the dominant symbiotic fungus Cenococcum geophilum

por Peter, Martina, Kohler, Annegret, Ohm, Robin A., Kuo, Alan, Krützmann, Jennifer, Morin, Emmanuelle, Arend, Matthias, Barry, Kerrie W., Binder, Manfred, Choi, Cindy, Clum, Alicia, Copeland, Alex, Grisel, Nadine, Haridas, Sajeet, Kipfer, Tabea, LaButti, Kurt, Lindquist, Erika, Lipzen, Anna, Maire, Renaud, Meier, Barbara, Mihaltcheva, Sirma, Molinier, Virginie, Murat, Claude, Pöggeler, Stefanie, Quandt, C. Alisha, Sperisen, Christoph, Tritt, Andrew, Tisserant, Emilie, Crous, Pedro W., Henrissat, Bernard, Nehls, Uwe, Egli, Simon, Spatafora, Joseph W., Grigoriev, Igor V., Martin, Francis M.
Publicado 2016