Consistency of VDJ Rearrangement and Substitution Parameters Enables Accurate B Cell Receptor Sequence Annotation

por Ralph, Duncan K., Matsen, Frederick A.
Publicado 2016

Likelihood-Based Inference of B Cell Clonal Families

por Ralph, Duncan K., Matsen, Frederick A.
Publicado 2016

Per-sample immunoglobulin germline inference from B cell receptor deep sequencing data

por Ralph, Duncan K., Matsen, Frederick A.
Publicado 2019

Using B cell receptor lineage structures to predict affinity

por Ralph, Duncan K., Matsen, Frederick A.
Publicado 2020

Inference of B cell clonal families using heavy/light chain pairing information

por Ralph, Duncan K., Matsen, Frederick A.
Publicado 2022

A Bayesian phylogenetic hidden Markov model for B cell receptor sequence analysis

por Dhar, Amrit, Ralph, Duncan K., Minin, Vladimir N., Matsen, Frederick A.
Publicado 2020

Functional development of a V3/glycan-specific broadly neutralizing antibody isolated from a case of HIV superinfection

por Shipley, Mackenzie M, Mangala Prasad, Vidya, Doepker, Laura E, Dingens, Adam, Ralph, Duncan K, Harkins, Elias, Dhar, Amrit, Arenz, Dana, Chohan, Vrasha, Weight, Haidyn, Mandaliya, Kishor, Bloom, Jesse D, Matsen, Frederick A, Lee, Kelly K, Overbaugh, Julie M
Publicado 2021

AIRR Community Standardized Representations for Annotated Immune Repertoires

por Vander Heiden, Jason Anthony, Marquez, Susanna, Marthandan, Nishanth, Bukhari, Syed Ahmad Chan, Busse, Christian E., Corrie, Brian, Hershberg, Uri, Kleinstein, Steven H., Matsen IV, Frederick A., Ralph, Duncan K., Rosenfeld, Aaron M., Schramm, Chaim A., Christley, Scott, Laserson, Uri
Publicado 2018

Development of antibody-dependent cell cytotoxicity function in HIV-1 antibodies

por Doepker, Laura E, Danon, Sonja, Harkins, Elias, Ralph, Duncan K, Yaffe, Zak, Garrett, Meghan E, Dhar, Amrit, Wagner, Cassia, Stumpf, Megan M, Arenz, Dana, Williams, James A, Jaoko, Walter, Mandaliya, Kishor, Lee, Kelly K, Matsen, Frederick A, Overbaugh, Julie M
Publicado 2021

Single B cell transcriptomics identifies multiple isotypes of broadly neutralizing antibodies against flaviviruses

por Lubow, Jay, Levoir, Lisa M., Ralph, Duncan K., Belmont, Laura, Contreras, Maya, Cartwright-Acar, Catiana H., Kikawa, Caroline, Kannan, Shruthi, Davidson, Edgar, Duran, Veronica, Rebellon-Sanchez, David E., Sanz, Ana M., Rosso, Fernando, Doranz, Benjamin J., Einav, Shirit, Matsen IV, Frederick A., Goo, Leslie
Publicado 2023