PolyMarker: A fast polyploid primer design pipeline

por Ramirez-Gonzalez, Ricardo H., Uauy, Cristobal, Caccamo, Mario
Publicado 2015

Bio-samtools: Ruby bindings for SAMtools, a library for accessing BAM files containing high-throughput sequence alignments

por Ramirez-Gonzalez, Ricardo H, Bonnal, Raoul, Caccamo, Mario, MacLean, Daniel
Publicado 2012

PyroClean: Denoising Pyrosequences from Protein-Coding Amplicons for the Recovery of Interspecific and Intraspecific Genetic Variation

por Ramirez-Gonzalez, Ricardo, Yu, Douglas W., Bruce, Catharine, Heavens, Darren, Caccamo, Mario, Emerson, Brent C.
Publicado 2013

Sequencing quality assessment tools to enable data-driven informatics for high throughput genomics

por Leggett, Richard M., Ramirez-Gonzalez, Ricardo H., Clavijo, Bernardo J., Waite, Darren, Davey, Robert P.
Publicado 2013

StatsDB: platform-agnostic storage and understanding of next generation sequencing run metrics

por Ramirez-Gonzalez, Ricardo H., Leggett, Richard M., Waite, Darren, Thanki, Anil, Drou, Nizar, Caccamo, Mario, Davey, Robert
Publicado 2014

Mutation Scanning in Wheat by Exon Capture and Next-Generation Sequencing

por King, Robert, Bird, Nicholas, Ramirez-Gonzalez, Ricardo, Coghill, Jane A., Patil, Archana, Hassani-Pak, Keywan, Uauy, Cristobal, Phillips, Andrew L.
Publicado 2015

Genome-Wide Transcription During Early Wheat Meiosis Is Independent of Synapsis, Ploidy Level, and the Ph1 Locus

por Martín, Azahara Carmen, Borrill, Philippa, Higgins, Janet, Alabdullah, Abdulkader, Ramírez-González, Ricardo H., Swarbreck, David, Uauy, Cristobal, Shaw, Peter, Moore, Graham
Publicado 2018

A Co-Expression Network in Hexaploid Wheat Reveals Mostly Balanced Expression and Lack of Significant Gene Loss of Homeologous Meiotic Genes Upon Polyploidization

por Alabdullah, Abdul Kader, Borrill, Philippa, Martin, Azahara C., Ramirez-Gonzalez, Ricardo H., Hassani-Pak, Keywan, Uauy, Cristobal, Shaw, Peter, Moore, Graham
Publicado 2019

Identifying and Classifying Trait Linked Polymorphisms in Non-Reference Species by Walking Coloured de Bruijn Graphs

por Leggett, Richard M., Ramirez-Gonzalez, Ricardo H., Verweij, Walter, Kawashima, Cintia G., Iqbal, Zamin, Jones, Jonathan D. G., Caccamo, Mario, MacLean, Daniel
Publicado 2013

Host Subtraction, Filtering and Assembly Validations for Novel Viral Discovery Using Next Generation Sequencing Data

por Daly, Gordon M., Leggett, Richard M., Rowe, William, Stubbs, Samuel, Wilkinson, Maxim, Ramirez-Gonzalez, Ricardo H., Caccamo, Mario, Bernal, William, Heeney, Jonathan L.
Publicado 2015

Global transcriptome analysis uncovers the gene co-expression regulation network and key genes involved in grain development of wheat (Triticum aestivum L.)

por Chi, Qing, Guo, Lijian, Ma, Meng, Zhang, Lijian, Mao, Hude, Wu, Baowei, Liu, Xiangli, Ramirez-Gonzalez, Ricardo H., Uauy, Cristobal, Appels, Rudi, Zhao, Huixian
Publicado 2019

A haplotype-led approach to increase the precision of wheat breeding

por Brinton, Jemima, Ramirez-Gonzalez, Ricardo H., Simmonds, James, Wingen, Luzie, Orford, Simon, Griffiths, Simon, Haberer, Georg, Spannagl, Manuel, Walkowiak, Sean, Pozniak, Curtis, Uauy, Cristobal
Publicado 2020

Impact of transposable elements on genome structure and evolution in bread wheat

por Wicker, Thomas, Gundlach, Heidrun, Spannagl, Manuel, Uauy, Cristobal, Borrill, Philippa, Ramírez-González, Ricardo H., De Oliveira, Romain, Mayer, Klaus F. X., Paux, Etienne, Choulet, Frédéric
Publicado 2018

Field pathogenomics reveals the emergence of a diverse wheat yellow rust population

por Hubbard, Amelia, Lewis, Clare M, Yoshida, Kentaro, Ramirez-Gonzalez, Ricardo H, de Vallavieille-Pope, Claude, Thomas, Jane, Kamoun, Sophien, Bayles, Rosemary, Uauy, Cristobal, Saunders, Diane GO
Publicado 2015

Wheat in vivo RNA structure landscape reveals a prevalent role of RNA structure in modulating translational subgenome expression asymmetry

por Yang, Xiaofei, Yu, Haopeng, Sun, Wenqing, Ding, Ling, Li, Ji, Cheema, Jitender, Ramirez-Gonzalez, Ricardo, Zhao, Xuebo, Martín, Azahara C., Lu, Fei, Liu, Bao, Uauy, Cristobal, Ding, Yiliang, Zhang, Huakun
Publicado 2021

Hotspots in the genomic architecture of field drought responses in wheat as breeding targets

por Gálvez, Sergio, Mérida-García, Rosa, Camino, Carlos, Borrill, Philippa, Abrouk, Michael, Ramírez-González, Ricardo H., Biyiklioglu, Sezgi, Amil-Ruiz, Francisco, Dorado, Gabriel, Budak, Hikmet, Gonzalez-Dugo, Victoria, Zarco-Tejada, Pablo J., Appels, Rudi, Uauy, Cristobal, Hernandez, Pilar
Publicado 2018

Evolution of an Eurasian Avian-like Influenza Virus in Naïve and Vaccinated Pigs

por Murcia, Pablo R., Hughes, Joseph, Battista, Patrizia, Lloyd, Lucy, Baillie, Gregory J., Ramirez-Gonzalez, Ricardo H., Ormond, Doug, Oliver, Karen, Elton, Debra, Mumford, Jennifer A., Caccamo, Mario, Kellam, Paul, Grenfell, Bryan T., Holmes, Edward C., Wood, James L. N.
Publicado 2012

Pathogen-induced biosynthetic pathways encode defense-related molecules in bread wheat

por Polturak, Guy, Dippe, Martin, Stephenson, Michael J., Chandra Misra, Rajesh, Owen, Charlotte, Ramirez-Gonzalez, Ricardo H., Haidoulis, John F., Schoonbeek, Henk-Jan, Chartrain, Laetitia, Borrill, Philippa, Nelson, David R., Brown, James K.M., Nicholson, Paul, Uauy, Cristobal, Osbourn, Anne
Publicado 2022

Biogem: an effective tool-based approach for scaling up open source software development in bioinformatics

por Bonnal, Raoul J.P., Aerts, Jan, Githinji, George, Goto, Naohisa, MacLean, Dan, Miller, Chase A., Mishima, Hiroyuki, Pagani, Massimiliano, Ramirez-Gonzalez, Ricardo, Smant, Geert, Strozzi, Francesco, Syme, Rob, Vos, Rutger, Wennblom, Trevor J., Woodcroft, Ben J., Katayama, Toshiaki, Prins, Pjotr
Publicado 2012

RNA-seq, de novo transcriptome assembly and flavonoid gene analysis in 13 wild and cultivated berry fruit species with high content of phenolics

por Thole, Vera, Bassard, Jean-Etienne, Ramírez-González, Ricardo, Trick, Martin, Ghasemi Afshar, Bijan, Breitel, Dario, Hill, Lionel, Foito, Alexandre, Shepherd, Louise, Freitag, Sabine, Nunes dos Santos, Cláudia, Menezes, Regina, Bañados, Pilar, Naesby, Michael, Wang, Liangsheng, Sorokin, Artem, Tikhonova, Olga, Shelenga, Tatiana, Stewart, Derek, Vain, Philippe, Martin, Cathie
Publicado 2019