Human protein-RNA interaction network is highly stable across mammals

por Ramakrishnan, Aarthi, Janga, Sarath Chandra
Publicado 2019

Six1 and Six2 of the Sine Oculis Homeobox Subfamily are Not Functionally Interchangeable in Mouse Nephron Formation

por Xu, Jinshu, Li, Jun, Ramakrishnan, Aarthi, Yan, Hanen, Shen, Li, Xu, Pin-Xian
Publicado 2022

Aryl hydrocarbon receptor restricts axon regeneration of DRG neurons in response to injury

por Wang, Yiqun, Halawani, Dalia, Estill, Molly, Ramakrishnan, Aarthi, Shen, Li, Friedel, Roland H., Zou, Hongyan
Publicado 2023

Circadian clock regulator Bmal1 gates axon regeneration via Tet3 epigenetics in mouse sensory neurons

por Halawani, Dalia, Wang, Yiqun, Ramakrishnan, Aarthi, Estill, Molly, He, Xijing, Shen, Li, Friedel, Roland H., Zou, Hongyan
Publicado 2023

The transcriptional coactivator Eya1 exerts transcriptional repressive activity by interacting with REST corepressors and REST-binding sequences to maintain nephron progenitor iden...

por Li, Jun, Cheng, Chunming, Xu, Jinshu, Zhang, Ting, Tokat, Bengu, Dolios, Georgia, Ramakrishnan, Aarthi, Shen, Li, Wang, Rong, Xu, Pin-Xian
Publicado 2022

Convergent abnormalities in striatal gene networks in human cocaine use disorder and mouse cocaine administration models

por Mews, Philipp, Cunningham, Ashley M., Scarpa, Joseph, Ramakrishnan, Aarthi, Hicks, Emily M., Bolnick, Sarah, Garamszegi, Susanna, Shen, Li, Mash, Deborah C., Nestler, Eric J.
Publicado 2023

Dynamic changes in cis-regulatory occupancy by Six1 and its cooperative interactions with distinct cofactors drive lineage-specific gene expression programs during progressive diff...

por Li, Jun, Zhang, Ting, Ramakrishnan, Aarthi, Fritzsch, Bernd, Xu, Jinshu, Wong, Elaine Y M, Loh, Yong-Hwee Eddie, Ding, Jianqiang, Shen, Li, Xu, Pin-Xian
Publicado 2020

TGM2-mediated histone transglutamination is dictated by steric accessibility

por Lukasak, Bradley J., Mitchener, Michelle M., Kong, Lingchun, Dul, Barbara E., Lazarus, Cole D., Ramakrishnan, Aarthi, Ni, Jizhi, Shen, Li, Maze, Ian, Muir, Tom W.
Publicado 2022

Macrophages facilitate peripheral nerve regeneration by organizing regeneration tracks through Plexin-B2

por Li, Yuhuan, Kang, Sangjo, Halawani, Dalia, Wang, Yiqun, Junqueira Alves, Chrystian, Ramakrishnan, Aarthi, Estill, Molly, Shen, Li, Li, Fengtao, He, Xijing, Friedel, Roland H., Zou, Hongyan
Publicado 2022

Diversified transcriptional responses of myeloid and glial cells in spinal cord injury shaped by HDAC3 activity

por Wahane, Shalaka, Zhou, Xianxiao, Zhou, Xiang, Guo, Lei, Friedl, Marie-Sophie, Kluge, Michael, Ramakrishnan, Aarthi, Shen, Li, Friedel, Caroline C., Zhang, Bin, Friedel, Roland H., Zou, Hongyan
Publicado 2021

Whole blood transcriptional signatures associated with rapid antidepressant response to ketamine in patients with treatment resistant depression

por Cathomas, Flurin, Bevilacqua, Laura, Ramakrishnan, Aarthi, Kronman, Hope, Costi, Sara, Schneider, Molly, Chan, Kenny L., Li, Long, Nestler, Eric J., Shen, Li, Charney, Dennis S., Russo, Scott J., Murrough, James W.
Publicado 2022

Early life stress alters transcriptomic patterning across reward circuitry in male and female mice

por Peña, Catherine Jensen, Smith, Milo, Ramakrishnan, Aarthi, Cates, Hannah M., Bagot, Rosemary C., Kronman, Hope G., Patel, Bhakti, Chang, Austin B., Purushothaman, Immanuel, Dudley, Joel, Morishita, Hirofumi, Shen, Li, Nestler, Eric J.
Publicado 2019

Chromatin profiling in human neurons reveals aberrant roles for histone acetylation and BET family proteins in schizophrenia

por Farrelly, Lorna A., Zheng, Shuangping, Schrode, Nadine, Topol, Aaron, Bhanu, Natarajan V., Bastle, Ryan M., Ramakrishnan, Aarthi, Chan, Jennifer C, Cetin, Bulent, Flaherty, Erin, Shen, Li, Gleason, Kelly, Tamminga, Carol A., Garcia, Benjamin A., Li, Haitao, Brennand, Kristen J., Maze, Ian
Publicado 2022

Transcriptional signatures of heroin intake and relapse throughout the brain reward circuitry in male mice

por Browne, Caleb J., Futamura, Rita, Minier-Toribio, Angélica, Hicks, Emily M., Ramakrishnan, Aarthi, Martínez-Rivera, Freddyson J., Estill, Molly, Godino, Arthur, Parise, Eric M., Torres-Berrío, Angélica, Cunningham, Ashley M., Hamilton, Peter J., Walker, Deena M., Huckins, Laura M., Hurd, Yasmin L., Shen, Li, Nestler, Eric J.
Publicado 2023

Transcriptional signatures of heroin intake and seeking throughout the brain reward circuit

por Browne, Caleb J, Futamura, Rita, Minier-Toribio, Angélica, Hicks, Emily M, Ramakrishnan, Aarthi, Martínez-Rivera, Freddyson, Estill, Molly, Godino, Arthur, Parise, Eric M, Torres-Berrío, Angélica, Cunningham, Ashley M, Hamilton, Peter J, Walker, Deena M, Huckins, Laura M., Hurd, Yasmin L, Shen, Li, Nestler, Eric J
Publicado 2023

Histone H3 serotonylation dynamics in dorsal raphe nucleus contribute to stress- and antidepressant-mediated gene expression and behavior

por Al-Kachak, Amni, Fulton, Sasha L., Di Salvo, Giuseppina, Chan, Jennifer C, Farrelly, Lorna A., Lepack, Ashley E., Bastle, Ryan M., Kong, Lingchun, Cathomas, Flurin, Newman, Emily L., Menard, Caroline, Ramakrishnan, Aarthi, Safovich, Polina, Lyu, Yang, Covington, Herbert E., Shen, Li, Gleason, Kelly, Tamminga, Carol A., Russo, Scott J., Maze, Ian
Publicado 2023

Plexin-B2 orchestrates collective stem cell dynamics via actomyosin contractility, cytoskeletal tension and adhesion

por Junqueira Alves, Chrystian, Dariolli, Rafael, Haydak, Jonathan, Kang, Sangjo, Hannah, Theodore, Wiener, Robert J., DeFronzo, Stefanie, Tejero, Rut, Gusella, Gabriele L., Ramakrishnan, Aarthi, Alves Dias, Rodrigo, Wojcinski, Alexandre, Kesari, Santosh, Shen, Li, Sobie, Eric A., Rodrigues Furtado de Mendonça, José Paulo, Azeloglu, Evren U., Zou, Hongyan, Friedel, Roland H.
Publicado 2021

The long noncoding RNA FEDORA is a cell type– and sex-specific regulator of depression

por Issler, Orna, van der Zee, Yentl Y., Ramakrishnan, Aarthi, Xia, Sunhui, Zinsmaier, Alexander K., Tan, Chunfeng, Li, Wei, Browne, Caleb J., Walker, Deena M., Salery, Marine, Torres-Berrío, Angélica, Futamura, Rita, Duffy, Julia E., Labonte, Benoit, Girgenti, Matthew J., Tamminga, Carol A., Dupree, Jeffrey L., Dong, Yan, Murrough, James W., Shen, Li, Nestler, Eric J.
Publicado 2022

Peripheral immune-derived matrix metalloproteinase promotes stress susceptibility

por Cathomas, Flurin, Lin, Hsiao-Yun, Chan, Kenny L., Li, Long, Durand-de Cuttoli, Romain, Parise, Lyonna F., Aubry, Antonio V., Muhareb, Samer, Desland, Fiona, Shimo, Yusuke, Ramakrishnan, Aarthi, Estill, Molly, Ferrer-Pérez, Carmen, Parise, Eric M., Wang, Jun, Sowa, Allison, Janssen, William G., Costi, Sara, Rahman, Adeeb, Fernandez, Nicolas, Swirski, Filip K., Nestler, Eric J., Shen, Li, Merad, Miriam, Murrough, James W., Russo, Scott J.
Publicado 2023

ZBTB7A regulates MDD-specific chromatin signatures and astrocyte-mediated stress vulnerability in orbitofrontal cortex

por Fulton, Sasha L., Bendl, Jaroslav, Gameiro-Ros, Isabel, Fullard, John F., Al-Kachak, Amni, Lepack, Ashley E., Stewart, Andrew F., Singh, Sumnima, Poller, Wolfram C., Bastle, Ryan M., Hauberg, Mads E., Fakira, Amanda K., Chen, Min, Cuttoli, Romain Durand-de, Cathomas, Flurin, Ramakrishnan, Aarthi, Gleason, Kelly, Shen, Li, Tamminga, Carol A., Milosevic, Ana, Russo, Scott J., Swirski, Filip, Blitzer, Robert D., Slesinger, Paul A., Roussos, Panos, Maze, Ian
Publicado 2023