Novel search method for the discovery of functional relationships

por Ramírez, Fidel, Lawyer, Glenn, Albrecht, Mario
Publicado 2012

DASMIweb: online integration, analysis and assessment of distributed protein interaction data

por Blankenburg, Hagen, Ramírez, Fidel, Büch, Joachim, Albrecht, Mario
Publicado 2009

deepTools: a flexible platform for exploring deep-sequencing data

por Ramírez, Fidel, Dündar, Friederike, Diehl, Sarah, Grüning, Björn A., Manke, Thomas
Publicado 2014

CAPRI enables comparison of evolutionarily conserved RNA interacting regions

por Panhale, Amol, Richter, Florian M., Ramírez, Fidel, Shvedunova, Maria, Manke, Thomas, Mittler, Gerhard, Akhtar, Asifa
Publicado 2019

Hi-C guided assemblies reveal conserved regulatory topologies on X and autosomes despite extensive genome shuffling

por Renschler, Gina, Richard, Gautier, Valsecchi, Claudia Isabelle Keller, Toscano, Sarah, Arrigoni, Laura, Ramírez, Fidel, Akhtar, Asifa
Publicado 2019

Dataset on application of electrochemical and photochemical processes for sulfacetamide antibiotic elimination in water

por Hincapié-Mejía, Gina, Granda-Ramírez, Fidel, Ferraro, Franklin, Serna-Galvis, Efraím A., Torres-Palma, Ricardo A.
Publicado 2020

pyGenomeTracks: reproducible plots for multivariate genomic datasets 

por Lopez-Delisle, Lucille, Rabbani, Leily, Wolff, Joachim, Bhardwaj, Vivek, Backofen, Rolf, Grüning, Björn, Ramírez, Fidel, Manke, Thomas
Publicado 2020

deepTools2: a next generation web server for deep-sequencing data analysis

por Ramírez, Fidel, Ryan, Devon P, Grüning, Björn, Bhardwaj, Vivek, Kilpert, Fabian, Richter, Andreas S, Heyne, Steffen, Dündar, Friederike, Manke, Thomas
Publicado 2016

High-resolution TADs reveal DNA sequences underlying genome organization in flies

por Ramírez, Fidel, Bhardwaj, Vivek, Arrigoni, Laura, Lam, Kin Chung, Grüning, Björn A., Villaveces, José, Habermann, Bianca, Akhtar, Asifa, Manke, Thomas
Publicado 2018

Galaxy HiCExplorer: a web server for reproducible Hi-C data analysis, quality control and visualization

por Wolff, Joachim, Bhardwaj, Vivek, Nothjunge, Stephan, Richard, Gautier, Renschler, Gina, Gilsbach, Ralf, Manke, Thomas, Backofen, Rolf, Ramírez, Fidel, Grüning, Björn A
Publicado 2018

DASMI: exchanging, annotating and assessing molecular interaction data

por Blankenburg, Hagen, Finn, Robert D., Prlić, Andreas, Jenkinson, Andrew M., Ramírez, Fidel, Emig, Dorothea, Schelhorn, Sven-Eric, Büch, Joachim, Lengauer, Thomas, Albrecht, Mario
Publicado 2009

RELACS nuclei barcoding enables high-throughput ChIP-seq

por Arrigoni, Laura, Al-Hasani, Hoor, Ramírez, Fidel, Panzeri, Ilaria, Ryan, Devon Patrick, Santacruz, Diana, Kress, Nadia, Pospisilik, John Andrew, Bönisch, Ulrike, Manke, Thomas
Publicado 2018

MOF-associated complexes ensure stem cell identity and Xist repression

por Chelmicki, Tomasz, Dündar, Friederike, Turley, Matthew James, Khanam, Tasneem, Aktas, Tugce, Ramírez, Fidel, Gendrel, Anne-Valerie, Wright, Patrick Rudolf, Videm, Pavankumar, Backofen, Rolf, Heard, Edith, Manke, Thomas, Akhtar, Asifa
Publicado 2014

A comprehensive analysis of 195 DNA methylomes reveals shared and cell-specific features of partially methylated domains

por Salhab, Abdulrahman, Nordström, Karl, Gasparoni, Gilles, Kattler, Kathrin, Ebert, Peter, Ramirez, Fidel, Arrigoni, Laura, Müller, Fabian, Polansky, Julia K., Cadenas, Cristina, G.Hengstler, Jan, Lengauer, Thomas, Manke, Thomas, Walter, Jörn
Publicado 2018

GOATOOLS: A Python library for Gene Ontology analyses

por Klopfenstein, D. V., Zhang, Liangsheng, Pedersen, Brent S., Ramírez, Fidel, Warwick Vesztrocy, Alex, Naldi, Aurélien, Mungall, Christopher J., Yunes, Jeffrey M., Botvinnik, Olga, Weigel, Mark, Dampier, Will, Dessimoz, Christophe, Flick, Patrick, Tang, Haibao
Publicado 2018

CD206(+) tumor-associated macrophages cross-present tumor antigen and drive antitumor immunity

por Modak, Madhura, Mattes, Ann-Kathrin, Reiss, Daniela, Skronska-Wasek, Wioletta, Langlois, Rebecca, Sabarth, Nicolas, Konopitzky, Renate, Ramirez, Fidel, Lehr, Katharina, Mayr, Tobias, Kind, David, Viollet, Coralie, Swee, Lee Kim, Petschenka, Jutta, El Kasmi, Karim C., Noessner, Elfriede, Kitt, Kerstin, Pflanz, Stefan
Publicado 2022

Induced Systemic Resistance in the Bacillus spp.—Capsicum chinense Jacq.—PepGMV Interaction, Elicited by Defense-Related Gene Expression

por Samaniego-Gámez, Blancka Yesenia, Valle-Gough, Raúl Enrique, Garruña-Hernández, René, Reyes-Ramírez, Arturo, Latournerie-Moreno, Luis, Tun-Suárez, José María, Villanueva-Alonzo, Hernán de Jesús, Nuñez-Ramírez, Fidel, Diaz, Lourdes Cervantes, Samaniego-Gámez, Samuel Uriel, Minero-García, Yereni, Hernandez-Zepeda, Cecilia, Moreno-Valenzuela, Oscar A.
Publicado 2023

A single-cell RNA-sequencing training and analysis suite using the Galaxy framework

por Tekman, Mehmet, Batut, Bérénice, Ostrovsky, Alexander, Antoniewski, Christophe, Clements, Dave, Ramirez, Fidel, Etherington, Graham J, Hotz, Hans-Rudolf, Scholtalbers, Jelle, Manning, Jonathan R, Bellenger, Lea, Doyle, Maria A, Heydarian, Mohammad, Huang, Ni, Soranzo, Nicola, Moreno, Pablo, Mautner, Stefan, Papatheodorou, Irene, Nekrutenko, Anton, Taylor, James, Blankenberg, Daniel, Backofen, Rolf, Grüning, Björn
Publicado 2020

miR449 Protects Airway Regeneration by Controlling AURKA/HDAC6-Mediated Ciliary Disassembly

por Wildung, Merit, Herr, Christian, Riedel, Dietmar, Wiedwald, Cornelia, Moiseenko, Alena, Ramírez, Fidel, Tasena, Hataitip, Heimerl, Maren, Alevra, Mihai, Movsisyan, Naira, Schuldt, Maike, Volceanov-Hahn, Larisa, Provoost, Sharen, Nöthe-Menchen, Tabea, Urrego, Diana, Freytag, Bernard, Wallmeier, Julia, Beisswenger, Christoph, Bals, Robert, van den Berge, Maarten, Timens, Wim, Hiemstra, Pieter S., Brandsma, Corry-Anke, Maes, Tania, Andreas, Stefan, Heijink, Irene H., Pardo, Luis A., Lizé, Muriel
Publicado 2022