An Empirical Prior Improves Accuracy for Bayesian Estimation of Transcription Factor Binding Site Frequencies within Gene Promoters

por Ramsey, Stephen A.
Publicado 2016

Identifying Cell Type-Specific Transcription Factors by Integrating ChIP-seq and eQTL Data–Application to Monocyte Gene Regulation

por Choudhury, Mudra, Ramsey, Stephen A.
Publicado 2016

CERENKOV3: Clustering and molecular network-derived features improve computational prediction of functional noncoding SNPs

por Yao, Yao, Ramsey, Stephen A.
Publicado 2020

Predicting chemotherapy response using a variational autoencoder approach

por Wei, Qi, Ramsey, Stephen A.
Publicado 2021

A systems biology approach to understanding atherosclerosis

por Ramsey, Stephen A, Gold, Elizabeth S, Aderem, Alan
Publicado 2010

Voting-based integration algorithm improves causal network learning from interventional and observational data: An application to cell signaling network inference

por Sinha, Meghamala, Tadepalli, Prasad, Ramsey, Stephen A.
Publicado 2021

CERENKOV2: improved detection of functional noncoding SNPs using data-space geometric features

por Yao, Yao, Liu, Zheng, Wei, Qi, Ramsey, Stephen A.
Publicado 2019

Control of Signaling in a MAP-kinase Pathway by an RNA-Binding Protein

por Prinz, Susanne, Aldridge, Christine, Ramsey, Stephen A., Taylor, R. James, Galitski, Timothy
Publicado 2007

Vitamin E Deficiency Disrupts Gene Expression Networks during Zebrafish Development

por Head, Brian, Ramsey, Stephen A., Kioussi, Chrissa, Tanguay, Robyn L., Traber, Maret G.
Publicado 2021

Asymmetric positive feedback loops reliably control biological responses

por Ratushny, Alexander V, Saleem, Ramsey A, Sitko, Katherine, Ramsey, Stephen A, Aitchison, John D
Publicado 2012

Reverse enGENEering of Regulatory Networks from Big Data: A Roadmap for Biologists

por Dong, Xiaoxi, Yambartsev, Anatoly, Ramsey, Stephen A, Thomas, Lina D, Shulzhenko, Natalia, Morgun, Andrey
Publicado 2015

Identifying novel transcription factors involved in the inflammatory response by using binding site motif scanning in genomic regions defined by histone acetylation

por Askovich, Peter S., Ramsey, Stephen A., Diercks, Alan H., Kennedy, Kathleen A., Knijnenburg, Theo A., Aderem, Alan
Publicado 2017

FACS-Seq analysis of Pax3-derived cells identifies non-myogenic lineages in the embryonic forelimb

por Singh, Arun J., Chang, Chih-Ning, Ma, Hsiao-Yen, Ramsey, Stephen A., Filtz, Theresa M., Kioussi, Chrissa
Publicado 2018

Prospective evaluation of the lymph node proteome in dogs with multicentric lymphoma supplemented with sulforaphane

por Parachini‐Winter, Cyril, Bracha, Shay, Ramsey, Stephen A., Yang, Liping, Ho, Emily, Leeper, Haley J., Curran, Kaitlin M.
Publicado 2020

Epigenome-Guided Analysis of the Transcriptome of Plaque Macrophages during Atherosclerosis Regression Reveals Activation of the Wnt Signaling Pathway

por Ramsey, Stephen A., Vengrenyuk, Yuliya, Menon, Prashanthi, Podolsky, Irina, Feig, Jonathan E., Aderem, Alan, Fisher, Edward A., Gold, Elizabeth S.
Publicado 2014

ATF3 protects against atherosclerosis by suppressing 25-hydroxycholesterol–induced lipid body formation

por Gold, Elizabeth S., Ramsey, Stephen A., Sartain, Mark J., Selinummi, Jyrki, Podolsky, Irina, Rodriguez, David J., Moritz, Robert L., Aderem, Alan
Publicado 2012

Urokinase Plasminogen Activator Induces Pro-Fibrotic/M2 Phenotype in Murine Cardiac Macrophages

por Meznarich, Jessica, Malchodi, Laura, Helterline, Deri, Ramsey, Stephen A., Bertko, Kate, Plummer, Tabitha, Plawman, Abigail, Gold, Elizabeth, Stempien-Otero, April
Publicado 2013

An approach for open multivariate analysis of integrated clinical and environmental exposures data

por Fecho, Karamarie, Haaland, Perry, Krishnamurthy, Ashok, Lan, Bo, Ramsey, Stephen A., Schmitt, Patrick L., Sharma, Priya, Sinha, Meghamala, Xu, Hao
Publicado 2021

Transcriptional responses to fatty acid are coordinated by combinatorial control

por Smith, Jennifer J, Ramsey, Stephen A, Marelli, Marcello, Marzolf, Bruz, Hwang, Daehee, Saleem, Ramsey A, Rachubinski, Richard A, Aitchison, John D
Publicado 2007

Role of the transcription factor C/EBPδ in a regulatory circuit that discriminates between transient and persistent Toll-like receptor 4-induced signals

por Litvak, Vladimir, Ramsey, Stephen A., Rust, Alistair G., Zak, Daniel E., Kennedy, Kathleen A., Lampano, Aaron E., Nykter, Matti, Shmulevich, Ilya, Aderem, Alan
Publicado 2009