KAGE: fast alignment-free graph-based genotyping of SNPs and short indels

por Grytten, Ivar, Dagestad Rand, Knut, Sandve, Geir Kjetil
Publicado 2022

Assessing graph-based read mappers against a baseline approach highlights strengths and weaknesses of current methods

por Grytten, Ivar, Rand, Knut D., Nederbragt, Alexander J., Sandve, Geir K.
Publicado 2020

Ten simple rules for quick and dirty scientific programming

por Balaban, Gabriel, Grytten, Ivar, Rand, Knut Dagestad, Scheffer, Lonneke, Sandve, Geir Kjetil
Publicado 2021

Coordinates and intervals in graph-based reference genomes

por Rand, Knut D., Grytten, Ivar, Nederbragt, Alexander J., Storvik, Geir O., Glad, Ingrid K., Sandve, Geir K.
Publicado 2017

Graph Peak Caller: Calling ChIP-seq peaks on graph-based reference genomes

por Grytten, Ivar, Rand, Knut D., Nederbragt, Alexander J., Storvik, Geir O., Glad, Ingrid K., Sandve, Geir K.
Publicado 2019

simAIRR: simulation of adaptive immune repertoires with realistic receptor sequence sharing for benchmarking of immune state prediction methods

por Kanduri, Chakravarthi, Scheffer, Lonneke, Pavlović, Milena, Rand, Knut Dagestad, Chernigovskaya, Maria, Pirvandy, Oz, Yaari, Gur, Greiff, Victor, Sandve, Geir K
Publicado 2023

GSuite HyperBrowser: integrative analysis of dataset collections across the genome and epigenome

por Simovski, Boris, Vodák, Daniel, Gundersen, Sveinung, Domanska, Diana, Azab, Abdulrahman, Holden, Lars, Holden, Marit, Grytten, Ivar, Rand, Knut, Drabløs, Finn, Johansen, Morten, Mora, Antonio, Lund-Andersen, Christin, Fromm, Bastian, Eskeland, Ragnhild, Gabrielsen, Odd Stokke, Ferkingstad, Egil, Nakken, Sigve, Bengtsen, Mads, Nederbragt, Alexander Johan, Thorarensen, Hildur Sif, Akse, Johannes Andreas, Glad, Ingrid, Hovig, Eivind, Sandve, Geir Kjetil
Publicado 2017