A computational pipeline to visualize DNA-protein binding states using dSMF data

por Rao, Satyanarayan, Ramachandran, Srinivas
Publicado 2022

Phenotypes from cell-free DNA

por Zukowski, Alexis, Rao, Satyanarayan, Ramachandran, Srinivas
Publicado 2020

Physicochemical models of protein–DNA binding with standard and modified base pairs

por Chiu, Tsu-Pei, Rao, Satyanarayan, Rohs, Remo
Publicado 2023

Genome-wide prediction of minor-groove electrostatic potential enables biophysical modeling of protein–DNA binding

por Chiu, Tsu-Pei, Rao, Satyanarayan, Mann, Richard S., Honig, Barry, Rohs, Remo
Publicado 2017

Systematic prediction of DNA shape changes due to CpG methylation explains epigenetic effects on protein–DNA binding

por Rao, Satyanarayan, Chiu, Tsu-Pei, Kribelbauer, Judith F., Mann, Richard S., Bussemaker, Harmen J., Rohs, Remo
Publicado 2018

Transcription factor–nucleosome dynamics from plasma cfDNA identifies ER-driven states in breast cancer

por Rao, Satyanarayan, Han, Amy L., Zukowski, Alexis, Kopin, Etana, Sartorius, Carol A., Kabos, Peter, Ramachandran, Srinivas
Publicado 2022

Evolving insights on how cytosine methylation affects protein–DNA binding

por Dantas Machado, Ana Carolina, Zhou, Tianyin, Rao, Satyanarayan, Goel, Pragya, Rastogi, Chaitanya, Lazarovici, Allan, Bussemaker, Harmen J., Rohs, Remo
Publicado 2015