Espalier: Efficient Tree Reconciliation and Ancestral Recombination Graphs Reconstruction Using Maximum Agreement Forests

por Rasmussen, David A, Guo, Fangfang
Publicado 2023

The effects of a deleterious mutation load on patterns of influenza A/H3N2's antigenic evolution in humans

por Koelle, Katia, Rasmussen, David A
Publicado 2015

Coupling adaptive molecular evolution to phylodynamics using fitness-dependent birth-death models

por Rasmussen, David A, Stadler, Tanja
Publicado 2019

What can you do with 0.1× genome coverage? A case study based on a genome survey of the scuttle fly Megaselia scalaris (Phoridae)

por Rasmussen, David A, Noor, Mohamed AF
Publicado 2009

Inference for Nonlinear Epidemiological Models Using Genealogies and Time Series

por Rasmussen, David A., Ratmann, Oliver, Koelle, Katia
Publicado 2011

Recombination-aware phylogeographic inference using the structured coalescent with ancestral recombination

por Guo, Fangfang, Carbone, Ignazio, Rasmussen, David A.
Publicado 2022

Reconciling Phylodynamics with Epidemiology: The Case of Dengue Virus in Southern Vietnam

por Rasmussen, David A., Boni, Maciej F., Koelle, Katia
Publicado 2014

Phylodynamic Inference for Structured Epidemiological Models

por Rasmussen, David A., Volz, Erik M., Koelle, Katia
Publicado 2014

The Structured Coalescent and Its Approximations

por Müller, Nicola F., Rasmussen, David A., Stadler, Tanja
Publicado 2017

Decomposing the sources of SARS-CoV-2 fitness variation in the United States

por Kepler, Lenora, Hamins-Puertolas, Marco, Rasmussen, David A
Publicado 2021

Insights into the Early Epidemic Spread of Ebola in Sierra Leone Provided by Viral Sequence Data

por Stadler, Tanja, Kühnert, Denise, Rasmussen, David A., du Plessis, Louis
Publicado 2014

Phylodynamics on local sexual contact networks

por Rasmussen, David A., Kouyos, Roger, Günthard, Huldrych F., Stadler, Tanja
Publicado 2017

Aphid Transmission of Potyvirus: The Largest Plant-Infecting RNA Virus Genus

por Gadhave, Kiran R., Gautam, Saurabh, Rasmussen, David A., Srinivasan, Rajagopalbabu
Publicado 2020

A dimensionless number for understanding the evolutionary dynamics of antigenically variable RNA viruses

por Koelle, Katia, Ratmann, Oliver, Rasmussen, David A., Pasour, Virginia, Mattingly, Jonathan
Publicado 2011

Evolutionary dynamics of Tomato spotted wilt virus within and between alternate plant hosts and thrips

por Ruark-Seward, Casey L., Bonville, Brian, Kennedy, George, Rasmussen, David A.
Publicado 2020

A51 Dengue virus multi-strain models as hypotheses for serotype interaction

por Souto-Maior, C., Rasmussen, David A., De Freitas, Maciel, Gomes, M.G.M.
Publicado 2017

Tracking external introductions of HIV using phylodynamics reveals a major source of infections in rural KwaZulu-Natal, South Africa

por Rasmussen, David A, Wilkinson, Eduan, Vandormael, Alain, Tanser, Frank, Pillay, Deenan, Stadler, Tanja, de Oliveira, Tulio
Publicado 2018

Estimating Epidemic Incidence and Prevalence from Genomic Data

por Vaughan, Timothy G, Leventhal, Gabriel E, Rasmussen, David A, Drummond, Alexei J, Welch, David, Stadler, Tanja
Publicado 2019

Plasmodium falciparum Genetic Diversity in Coincident Human and Mosquito Hosts

por Lapp, Zena, Obala, Andrew A., Abel, Lucy, Rasmussen, David A., Sumner, Kelsey M., Freedman, Elizabeth, Taylor, Steve M., Prudhomme-O’Meara, Wendy
Publicado 2022

Epidemiology of Plasmid Lineages Mediating the Spread of Extended-Spectrum Beta-Lactamases among Clinical Escherichia coli

por Mahmud, Bejan, Wallace, Meghan A., Reske, Kimberly A., Alvarado, Kelly, Muenks, Carol E., Rasmussen, David A., Burnham, Carey-Ann D., Lanzas, Cristina, Dubberke, Erik R., Dantas, Gautam
Publicado 2022