A Bayesian Approach for Fast and Accurate Gene Tree Reconstruction

por Rasmussen, Matthew D., Kellis, Manolis
Publicado 2011

Evolution at the Subgene Level: Domain Rearrangements in the Drosophila Phylogeny

por Wu, Yi-Chieh, Rasmussen, Matthew D., Kellis, Manolis
Publicado 2012

TreeFix: Statistically Informed Gene Tree Error Correction Using Species Trees

por Wu, Yi-Chieh, Rasmussen, Matthew D., Bansal, Mukul S., Kellis, Manolis
Publicado 2013

Most parsimonious reconciliation in the presence of gene duplication, loss, and deep coalescence using labeled coalescent trees

por Wu, Yi-Chieh, Rasmussen, Matthew D., Bansal, Mukul S., Kellis, Manolis
Publicado 2014

Genome-Wide Inference of Ancestral Recombination Graphs

por Rasmussen, Matthew D., Hubisz, Melissa J., Gronau, Ilan, Siepel, Adam
Publicado 2014

Performance and Scalability of Discriminative Metrics for Comparative Gene Identification in 12 Drosophila Genomes

por Lin, Michael F., Deoras, Ameya N., Rasmussen, Matthew D., Kellis, Manolis
Publicado 2008

Roles of Major Facilitator Superfamily Transporters in Phosphate Response in Drosophila

por Bergwitz, Clemens, Rasmussen, Matthew D., DeRobertis, Charles, Wee, Mark J., Sinha, Sumi, Chen, Hway H., Huang, Joanne, Perrimon, Norbert
Publicado 2012

Zero-shot interpretable phenotyping of postpartum hemorrhage using large language models

por Alsentzer, Emily, Rasmussen, Matthew J., Fontoura, Romy, Cull, Alexis L., Beaulieu-Jones, Brett, Gray, Kathryn J., Bates, David W., Kovacheva, Vesela P.
Publicado 2023

Anatomic analysis of the native ligamentum teres

por Brady, Alex W., Mikula, Jacob D., Chahla, Jorge, Slette, Erik, Trindade, Cristiano, Rasmussen, Matthew T., Harris, Matthew, LaPrade, Robert F., Philippon, Marc J.
Publicado 2016

Quantitative Anatomic Analysis of the Native Ligamentum Teres

por Mikula, Jacob D., Slette, Erik L., Chahla, Jorge, Brady, Alex W., Locks, Renato, Trindade, Christiano A. C., Rasmussen, Matthew T., LaPrade, Robert F., Philippon, Marc J.
Publicado 2017

Structural Properties of the Native Ligamentum Teres

por Philippon, Marc J., Rasmussen, Matthew T., Turnbull, Travis Lee, Trindade, Christiano A.C., Hamming, Mark G., Ellman, Michael B., Harris, Matthew, LaPrade, Robert F., Wijdicks, Coen A.
Publicado 2014

Evolution of pathogenicity and sexual reproduction in eight Candida genomes

por Butler, Geraldine, Rasmussen, Matthew D., Lin, Michael F., Santos, Manuel A.S., Sakthikumar, Sharadha, Munro, Carol A., Rheinbay, Esther, Grabherr, Manfred, Forche, Anja, Reedy, Jennifer L., Agrafioti, Ino, Arnaud, Martha B., Bates, Steven, Brown, Alistair J.P., Brunke, Sascha, Costanzo, Maria C., Fitzpatrick, David A., de Groot, Piet W. J., Harris, David, Hoyer, Lois L., Hube, Bernhard, Klis, Frans M., Kodira, Chinnappa, Lennard, Nicola, Logue, Mary E., Martin, Ronny, Neiman, Aaron M., Nikolaou, Elissavet, Quail, Michael A., Quinn, Janet, Santos, Maria C., Schmitzberger, Florian F., Sherlock, Gavin, Shah, Prachi, Silverstein, Kevin, Skrzypek, Marek S., Soll, David, Staggs, Rodney, Stansfield, Ian, Stumpf, Michael P H, Sudbery, Peter E., Thyagarajan, Srikantha, Zeng, Qiandong, Berman, Judith, Berriman, Matthew, Heitman, Joseph, Gow, Neil A. R., Lorenz, Michael C., Birren, Bruce W., Kellis, Manolis, Cuomo, Christina A.
Publicado 2009

A high-resolution map of human evolutionary constraint using 29 mammals

por Lindblad-Toh, Kerstin, Garber, Manuel, Zuk, Or, Lin, Michael F., Parker, Brian J., Washietl, Stefan, Kheradpour, Pouya, Ernst, Jason, Jordan, Gregory, Mauceli, Evan, Ward, Lucas D., Lowe, Craig B., Holloway, Alisha K., Clamp, Michele, Gnerre, Sante, Alfoldi, Jessica, Beal, Kathryn, Chang, Jean, Clawson, Hiram, Cuff, James, Di Palma, Federica, Fitzgerald, Stephen, Flicek, Paul, Guttman, Mitchell, Hubisz, Melissa J, Jaffe, David B., Jungreis, Irwin, Kent, W James, Kostka, Dennis, Lara, Marcia, Martins, Andre L, Massingham, Tim, Moltke, Ida, Raney, Brian J., Rasmussen, Matthew D., Robinson, Jim, Stark, Alexander, Vilella, Albert J., Wen, Jiayu, Xie, Xiaohui, Zody, Michael C., Worley, Kim C., Kovar, Christie L., Muzny, Donna M., Gibbs, Richard A., Warren, Wesley C., Mardis, Elaine R, Weinstock, George M., Wilson, Richard K., Birney, Ewan, Margulies, Elliott H., Herrero, Javier, Green, Eric D., Haussler, David, Siepel, Adam, Goldman, Nick, Pollard, Katherine S., Pedersen, Jakob S., Lander, Eric S., Kellis, Manolis
Publicado 2011

A comparative encyclopedia of DNA elements in the mouse genome

por Yue, Feng, Cheng, Yong, Breschi, Alessandra, Vierstra, Jeff, Wu, Weisheng, Ryba, Tyrone, Sandstrom, Richard, Ma, Zhihai, Davis, Carrie, Pope, Benjamin D., Shen, Yin, Pervouchine, Dmitri D., Djebali, Sarah, Thurman, Robert E., Kaul, Rajinder, Rynes, Eric, Kirilusha, Anthony, Marinov, Georgi K., Williams, Brian A., Trout, Diane, Amrhein, Henry, Fisher-Aylor, Katherine, Antoshechkin, Igor, DeSalvo, Gilberto, See, Lei-Hoon, Fastuca, Meagan, Drenkow, Jorg, Zaleski, Chris, Dobin, Alex, Prieto, Pablo, Lagarde, Julien, Bussotti, Giovanni, Tanzer, Andrea, Denas, Olgert, Li, Kanwei, Bender, M. A., Zhang, Miaohua, Byron, Rachel, Groudine, Mark T., McCleary, David, Pham, Long, Ye, Zhen, Kuan, Samantha, Edsall, Lee, Wu, Yi-Chieh, Rasmussen, Matthew D., Bansal, Mukul S., Kellis, Manolis, Keller, Cheryl A., Morrissey, Christapher S., Mishra, Tejaswini, Jain, Deepti, Dogan, Nergiz, Harris, Robert S., Cayting, Philip, Kawli, Trupti, Boyle, Alan P., Euskirchen, Ghia, Kundaje, Anshul, Lin, Shin, Lin, Yiing, Jansen, Camden, Malladi, Venkat S., Cline, Melissa S., Erickson, Drew T., Kirkup, Vanessa M., Learned, Katrina, Sloan, Cricket A., Rosenbloom, Kate R., Lacerda de Sousa, Beatriz, Beal, Kathryn, Pignatelli, Miguel, Flicek, Paul, Lian, Jin, Kahveci, Tamer, Lee, Dongwon, James Kent, W., Ramalho Santos, Miguel, Herrero, Javier, Notredame, Cedric, Johnson, Audra, Vong, Shinny, Lee, Kristen, Bates, Daniel, Neri, Fidencio, Diegel, Morgan, Canfield, Theresa, Sabo, Peter J., Wilken, Matthew S., Reh, Thomas A., Giste, Erika, Shafer, Anthony, Kutyavin, Tanya, Haugen, Eric, Dunn, Douglas, Reynolds, Alex P., Neph, Shane, Humbert, Richard, Scott Hansen, R., De Bruijn, Marella, Selleri, Licia, Rudensky, Alexander, Josefowicz, Steven, Samstein, Robert, Eichler, Evan E., Orkin, Stuart H., Levasseur, Dana, Papayannopoulou, Thalia, Chang, Kai-Hsin, Skoultchi, Arthur, Gosh, Srikanta, Disteche, Christine, Treuting, Piper, Wang, Yanli, Weiss, Mitchell J., Blobel, Gerd A., Cao, Xiaoyi, Zhong, Sheng, Wang, Ting, Good, Peter J., Lowdon, Rebecca F., Adams, Leslie B., Zhou, Xiao-Qiao, Pazin, Michael J., Feingold, Elise A., Wold, Barbara, Taylor, James, Mortazavi, Ali, Weissman, Sherman M., Stamatoyannopoulos, John A., Snyder, Michael P., Guigo, Roderic, Gingeras, Thomas R., Gilbert, David M., Hardison, Ross C., Beer, Michael A., Ren, Bing
Publicado 2014