SVXplorer: Three-tier approach to identification of structural variants via sequential recombination of discordant cluster signatures

por Kathuria, Kunal, Ratan, Aakrosh
Publicado 2020

Protocol for integrative subtyping of lower-grade gliomas using the SUMO pipeline

por Sienkiewicz, Karolina, Ratan, Aakrosh
Publicado 2022

Germline variants predictive of tumor mutational burden and immune checkpoint inhibitor efficacy

por Chatrath, Ajay, Ratan, Aakrosh, Dutta, Anindya
Publicado 2021

Integrated bioinformatic pipeline using whole-exome and RNAseq data to identify germline variants correlated with cancer

por Sahu, Divya, Chatrath, Ajay, Ratan, Aakrosh, Dutta, Anindya
Publicado 2022

Implementation of a Hamming distance–like genomic quantum classifier using inner products on ibmqx2 and ibmq_16_melbourne

por Kathuria, Kunal, Ratan, Aakrosh, McConnell, Michael, Bekiranov, Stefan
Publicado 2020

Identification of indels in next-generation sequencing data

por Ratan, Aakrosh, Olson, Thomas L, Loughran, Thomas P, Miller, Webb
Publicado 2015

Calling SNPs without a reference sequence

por Ratan, Aakrosh, Zhang, Yu, Hayes, Vanessa M, Schuster, Stephan C, Miller, Webb
Publicado 2010

Comparison of Sequencing Platforms for Single Nucleotide Variant Calls in a Human Sample

por Ratan, Aakrosh, Miller, Webb, Guillory, Joseph, Stinson, Jeremy, Seshagiri, Somasekar, Schuster, Stephan C.
Publicado 2013

Khoisan hunter-gatherers have been the largest population throughout most of modern-human demographic history

por Kim, Hie Lim, Ratan, Aakrosh, Perry, George H., Montenegro, Alvaro, Miller, Webb, Schuster, Stephan C.
Publicado 2014

A massively parallel strategy for STR marker development, capture, and genotyping

por Kistler, Logan, Johnson, Stephen M., Irwin, Mitchell T., Louis, Edward E., Ratan, Aakrosh, Perry, George H.
Publicado 2017

Genomic analysis of DNA repair genes and androgen signaling in prostate cancer

por Jividen, Kasey, Kedzierska, Katarzyna Z, Yang, Chun-Song, Szlachta, Karol, Ratan, Aakrosh, Paschal, Bryce M
Publicado 2018

Detecting molecular subtypes from multi-omics datasets using SUMO

por Sienkiewicz, Karolina, Chen, Jinyu, Chatrath, Ajay, Lawson, John T., Sheffield, Nathan C., Zhang, Louxin, Ratan, Aakrosh
Publicado 2022

Data characterizing the chloroplast genomes of extinct and endangered Hawaiian endemic mints (Lamiaceae) and their close relatives

por Welch, Andreanna J., Collins, Katherine, Ratan, Aakrosh, Drautz-Moses, Daniela I., Schuster, Stephan C., Lindqvist, Charlotte
Publicado 2016

Human endogenous retrovirus-K mRNA expression and genomic alignment data in hepatoblastoma

por Grabski, David F, Ratan, Aakrosh, Gray, Laurie R, Bekiranov, Stefan, Rekosh, David, Hammarskjold, Marie-Louise, Rasmussen, Sara K
Publicado 2020

Genomic Variants Among Threatened Acropora Corals

por Kitchen, Sheila. A., Ratan, Aakrosh, Bedoya-Reina, Oscar C., Burhans, Richard, Fogarty, Nicole D., Miller, Webb, Baums, Iliana B.
Publicado 2019

Functional Architecture of Deleterious Genetic Variants in the Genome of a Wrangel Island Mammoth

por Fry, Erin, Kim, Sun K, Chigurapti, Sravanthi, Mika, Katelyn M, Ratan, Aakrosh, Dammermann, Alexander, Mitchell, Brian J, Miller, Webb, Lynch, Vincent J
Publicado 2020

A Genome Sequence Resource for the Aye-Aye (Daubentonia madagascariensis), a Nocturnal Lemur from Madagascar

por Perry, George H., Reeves, Darryl, Melsted, Páll, Ratan, Aakrosh, Miller, Webb, Michelini, Katelyn, Louis, Edward E., Pritchard, Jonathan K., Mason, Christopher E., Gilad, Yoav
Publicado 2012

Induction of PARP7 Creates a Vulnerability for Growth Inhibition by RBN2397 in Prostate Cancer Cells

por Yang, Chunsong, Wierbiłowicz, Krzysztof, Dworak, Natalia M., Bae, Song Yi, Tengse, Sachi B., Abianeh, Nicki, Drake, Justin M., Abbas, Tarek, Ratan, Aakrosh, Wotton, David, Paschal, Bryce M.
Publicado 2023

Whole Genome Sequencing of Spontaneously Occurring Rat Natural Killer Large Granular Lymphocyte Leukemia Identifies JAK1 Somatic Activating Mutation

por Wang, T. Tiffany, Yang, Jun, Dighe, Shubha, Schmachtenberg, Matthew W., Leigh, Nathan T., Farber, Emily, Onengut-Gumuscu, Suna, Feith, David J., Ratan, Aakrosh, Loughran, Thomas P., Olson, Thomas L.
Publicado 2020

Genetic Variation in Reproductive Investment Across an Ephemerality Gradient in Daphnia pulex

por Barnard-Kubow, Karen B, Becker, Dörthe, Murray, Connor S, Porter, Robert, Gutierrez, Grace, Erickson, Priscilla, Nunez, Joaquin C B, Voss, Erin, Suryamohan, Kushal, Ratan, Aakrosh, Beckerman, Andrew, Bergland, Alan O
Publicado 2022