KG-COVID-19: a framework to produce customized knowledge graphs for COVID-19 response

por Reese, Justin, Unni, Deepak, Callahan, Tiffany J., Cappelletti, Luca, Ravanmehr, Vida, Carbon, Seth, Fontana, Tommaso, Blau, Hannah, Matentzoglu, Nicolas, Harris, Nomi L., Munoz-Torres, Monica C., Robinson, Peter N., Joachimiak, Marcin P., Mungall, Christopher J.
Publicado 2020

Supervised learning with word embeddings derived from PubMed captures latent knowledge about protein kinases and cancer

por Ravanmehr, Vida, Blau, Hannah, Cappelletti, Luca, Fontana, Tommaso, Carmody, Leigh, Coleman, Ben, George, Joshy, Reese, Justin, Joachimiak, Marcin, Bocci, Giovanni, Hansen, Peter, Bult, Carol, Rueter, Jens, Casiraghi, Elena, Valentini, Giorgio, Mungall, Christopher, Oprea, Tudor I, Robinson, Peter N
Publicado 2021

KG-COVID-19: A Framework to Produce Customized Knowledge Graphs for COVID-19 Response

por Reese, Justin T., Unni, Deepak, Callahan, Tiffany J., Cappelletti, Luca, Ravanmehr, Vida, Carbon, Seth, Shefchek, Kent A., Good, Benjamin M., Balhoff, James P., Fontana, Tommaso, Blau, Hannah, Matentzoglu, Nicolas, Harris, Nomi L., Munoz-Torres, Monica C., Haendel, Melissa A., Robinson, Peter N., Joachimiak, Marcin P., Mungall, Christopher J.
Publicado 2020

KG-Hub—building and exchanging biological knowledge graphs

por Caufield, J Harry, Putman, Tim, Schaper, Kevin, Unni, Deepak R, Hegde, Harshad, Callahan, Tiffany J, Cappelletti, Luca, Moxon, Sierra A T, Ravanmehr, Vida, Carbon, Seth, Chan, Lauren E, Cortes, Katherina, Shefchek, Kent A, Elsarboukh, Glass, Balhoff, Jim, Fontana, Tommaso, Matentzoglu, Nicolas, Bruskiewich, Richard M, Thessen, Anne E, Harris, Nomi L, Munoz-Torres, Monica C, Haendel, Melissa A, Robinson, Peter N, Joachimiak, Marcin P, Mungall, Christopher J, Reese, Justin T
Publicado 2023

Prolonged cytopenia following CD19 CAR T cell therapy is linked with bone marrow infiltration of clonally expanded IFNγ-expressing CD8 T cells

por Strati, Paolo, Li, Xubin, Deng, Qing, Marques-Piubelli, Mario L., Henderson, Jared, Watson, Grace, Deaton, Laurel, Cain, Taylor, Yang, Haopeng, Ravanmehr, Vida, Fayad, Luis E., Iyer, Swaminathan P., Nastoupil, Loretta J., Hagemeister, Frederick B., Parra, Edwin R., Saini, Neeraj, Takahashi, Koichi, Fowler, Nathan H., Westin, Jason R., Steiner, Raphael E., Nair, Ranjit, Flowers, Christopher R., Wang, Linghua, Ahmed, Sairah, Al-Atrash, Gheath, Vega, Francisco, Neelapu, Sattva S., Green, Michael R.
Publicado 2023

Semantic integration of clinical laboratory tests from electronic health records for deep phenotyping and biomarker discovery

por Zhang, Xingmin Aaron, Yates, Amy, Vasilevsky, Nicole, Gourdine, J. P., Callahan, Tiffany J., Carmody, Leigh C., Danis, Daniel, Joachimiak, Marcin P., Ravanmehr, Vida, Pfaff, Emily R., Champion, James, Robasky, Kimberly, Xu, Hao, Fecho, Karamarie, Walton, Nephi A., Zhu, Richard L., Ramsdill, Justin, Mungall, Christopher J., Köhler, Sebastian, Haendel, Melissa A., McDonald, Clement J., Vreeman, Daniel J., Peden, David B., Bennett, Tellen D., Feinstein, James A., Martin, Blake, Stefanski, Adrianne L., Hunter, Lawrence E., Chute, Christopher G., Robinson, Peter N.
Publicado 2019

The Monarch Initiative in 2019: an integrative data and analytic platform connecting phenotypes to genotypes across species

por Shefchek, Kent A, Harris, Nomi L, Gargano, Michael, Matentzoglu, Nicolas, Unni, Deepak, Brush, Matthew, Keith, Daniel, Conlin, Tom, Vasilevsky, Nicole, Zhang, Xingmin Aaron, Balhoff, James P, Babb, Larry, Bello, Susan M, Blau, Hannah, Bradford, Yvonne, Carbon, Seth, Carmody, Leigh, Chan, Lauren E, Cipriani, Valentina, Cuzick, Alayne, Della Rocca, Maria, Dunn, Nathan, Essaid, Shahim, Fey, Petra, Grove, Chris, Gourdine, Jean-Phillipe, Hamosh, Ada, Harris, Midori, Helbig, Ingo, Hoatlin, Maureen, Joachimiak, Marcin, Jupp, Simon, Lett, Kenneth B, Lewis, Suzanna E, McNamara, Craig, Pendlington, Zoë M, Pilgrim, Clare, Putman, Tim, Ravanmehr, Vida, Reese, Justin, Riggs, Erin, Robb, Sofia, Roncaglia, Paola, Seager, James, Segerdell, Erik, Similuk, Morgan, Storm, Andrea L, Thaxon, Courtney, Thessen, Anne, Jacobsen, Julius O B, McMurry, Julie A, Groza, Tudor, Köhler, Sebastian, Smedley, Damian, Robinson, Peter N, Mungall, Christopher J, Haendel, Melissa A, Munoz-Torres, Monica C, Osumi-Sutherland, David
Publicado 2020