Systematic genomic analysis reveals the complementary aerobic and anaerobic respiration capacities of the human gut microbiota

por Ravcheev, Dmitry A., Thiele, Ines
Publicado 2014

Genomic Analysis of the Human Gut Microbiome Suggests Novel Enzymes Involved in Quinone Biosynthesis

por Ravcheev, Dmitry A., Thiele, Ines
Publicado 2016

Comparative Genomic Analysis of the Human Gut Microbiome Reveals a Broad Distribution of Metabolic Pathways for the Degradation of Host-Synthetized Mucin Glycans and Utilization of...

por Ravcheev, Dmitry A., Thiele, Ines
Publicado 2017

Paracoccus denitrificans possesses two BioR homologs having a role in regulation of biotin metabolism

por Feng, Youjun, Kumar, Ritesh, Ravcheev, Dmitry A, Zhang, Huimin
Publicado 2015

Comparative Genomic Analysis Reveals Novel Microcompartment-Associated Metabolic Pathways in the Human Gut Microbiome

por Ravcheev, Dmitry A., Moussu, Lubin, Smajic, Semra, Thiele, Ines
Publicado 2019

Systematic genome assessment of B-vitamin biosynthesis suggests co-operation among gut microbes

por Magnúsdóttir, Stefanía, Ravcheev, Dmitry, de Crécy-Lagard, Valérie, Thiele, Ines
Publicado 2015

Nitrogen Fixation and Molecular Oxygen: Comparative Genomic Reconstruction of Transcription Regulation in Alphaproteobacteria

por Tsoy, Olga V., Ravcheev, Dmitry A., Čuklina, Jelena, Gelfand, Mikhail S.
Publicado 2016

Comparative genomic analysis of regulation of anaerobic respiration in ten genomes from three families of gamma-proteobacteria (Enterobacteriaceae, Pasteurellaceae, Vibrionaceae)

por Ravcheev, Dmitry A, Gerasimova, Anna V, Mironov, Andrey A, Gelfand, Mikhail S
Publicado 2007

Polysaccharides utilization in human gut bacterium Bacteroides thetaiotaomicron: comparative genomics reconstruction of metabolic and regulatory networks

por Ravcheev, Dmitry A, Godzik, Adam, Osterman, Andrei L, Rodionov, Dmitry A
Publicado 2013

Systematic assessment of secondary bile acid metabolism in gut microbes reveals distinct metabolic capabilities in inflammatory bowel disease

por Heinken, Almut, Ravcheev, Dmitry A., Baldini, Federico, Heirendt, Laurent, Fleming, Ronan M. T., Thiele, Ines
Publicado 2019

Genomic reconstruction of transcriptional regulatory networks in lactic acid bacteria

por Ravcheev, Dmitry A, Best, Aaron A, Sernova, Natalia V, Kazanov, Marat D, Novichkov, Pavel S, Rodionov, Dmitry A
Publicado 2013

Comparative genomics and evolution of transcriptional regulons in Proteobacteria

por Leyn, Semen A., Suvorova, Inna A., Kazakov, Alexey E., Ravcheev, Dmitry A., Stepanova, Vita V., Novichkov, Pavel S., Rodionov, Dmitry A.
Publicado 2016

Transcriptional regulation of the carbohydrate utilization network in Thermotoga maritima

por Rodionov, Dmitry A., Rodionova, Irina A., Li, Xiaoqing, Ravcheev, Dmitry A., Tarasova, Yekaterina, Portnoy, Vasiliy A., Zengler, Karsten, Osterman, Andrei L.
Publicado 2013

Two novel regulators of N‐acetyl‐galactosamine utilization pathway and distinct roles in bacterial infections

por Zhang, Huimin, Ravcheev, Dmitry A., Hu, Dan, Zhang, Fengyu, Gong, Xiufang, Hao, Lina, Cao, Min, Rodionov, Dmitry A., Wang, Changjun, Feng, Youjun
Publicado 2015

Comparative genomics and evolution of regulons of the LacI-family transcription factors

por Ravcheev, Dmitry A., Khoroshkin, Matvei S., Laikova, Olga N., Tsoy, Olga V., Sernova, Natalia V., Petrova, Svetlana A., Rakhmaninova, Aleksandra B., Novichkov, Pavel S., Gelfand, Mikhail S., Rodionov, Dmitry A.
Publicado 2014

RegPrecise 3.0 – A resource for genome-scale exploration of transcriptional regulation in bacteria

por Novichkov, Pavel S, Kazakov, Alexey E, Ravcheev, Dmitry A, Leyn, Semen A, Kovaleva, Galina Y, Sutormin, Roman A, Kazanov, Marat D, Riehl, William, Arkin, Adam P, Dubchak, Inna, Rodionov, Dmitry A
Publicado 2013

Genome-scale metabolic reconstruction of 7,302 human microorganisms for personalized medicine

por Heinken, Almut, Hertel, Johannes, Acharya, Geeta, Ravcheev, Dmitry A., Nyga, Malgorzata, Okpala, Onyedika Emmanuel, Hogan, Marcus, Magnúsdóttir, Stefanía, Martinelli, Filippo, Nap, Bram, Preciat, German, Edirisinghe, Janaka N., Henry, Christopher S., Fleming, Ronan M. T., Thiele, Ines
Publicado 2023

Comparative genomic reconstruction of transcriptional networks controlling central metabolism in the Shewanella genus

por Rodionov, Dmitry A, Novichkov, Pavel S, Stavrovskaya, Elena D, Rodionova, Irina A, Li, Xiaoqing, Kazanov, Marat D, Ravcheev, Dmitry A, Gerasimova, Anna V, Kazakov, Alexey E, Kovaleva, Galina Yu, Permina, Elizabeth A, Laikova, Olga N, Overbeek, Ross, Romine, Margaret F, Fredrickson, James K, Arkin, Adam P, Dubchak, Inna, Osterman, Andrei L, Gelfand, Mikhail S
Publicado 2011

The Virtual Metabolic Human database: integrating human and gut microbiome metabolism with nutrition and disease

por Noronha, Alberto, Modamio, Jennifer, Jarosz, Yohan, Guerard, Elisabeth, Sompairac, Nicolas, Preciat, German, Daníelsdóttir, Anna Dröfn, Krecke, Max, Merten, Diane, Haraldsdóttir, Hulda S, Heinken, Almut, Heirendt, Laurent, Magnúsdóttir, Stefanía, Ravcheev, Dmitry A, Sahoo, Swagatika, Gawron, Piotr, Friscioni, Lucia, Garcia, Beatriz, Prendergast, Mabel, Puente, Alberto, Rodrigues, Mariana, Roy, Akansha, Rouquaya, Mouss, Wiltgen, Luca, Žagare, Alise, John, Elisabeth, Krueger, Maren, Kuperstein, Inna, Zinovyev, Andrei, Schneider, Reinhard, Fleming, Ronan M T, Thiele, Ines
Publicado 2019