SNPsea: an algorithm to identify cell types, tissues and pathways affected by risk loci

por Slowikowski, Kamil, Hu, Xinli, Raychaudhuri, Soumya
Publicado 2014

HATK: HLA analysis toolkit

por Choi, Wanson, Luo, Yang, Raychaudhuri, Soumya, Han, Buhm
Publicado 2020

How COVID-19 is changing rheumatology clinical practice

por Bonfá, Eloisa, Gossec, Laure, Isenberg, David A., Li, Zhanguo, Raychaudhuri, Soumya
Publicado 2020

The T cell receptor sequence influences the likelihood of T cell memory formation

por Lagattuta, Kaitlyn A., Nathan, Aparna, Rumker, Laurie, Birnbaum, Michael E., Raychaudhuri, Soumya
Publicado 2023

HLA autoimmune risk alleles restrict the hypervariable region of T cell receptors

por Ishigaki, Kazuyoshi, Lagattuta, Kaitlyn, Luo, Yang, James, Eddie, Buckner, Jane H., Raychaudhuri, Soumya
Publicado 2022

Tissue-Specific Enrichment of Lymphoma Risk Loci in Regulatory Elements

por Hayes, James E., Trynka, Gosia, Vijai, Joseph, Offit, Kenneth, Raychaudhuri, Soumya, Klein, Robert J.
Publicado 2015

Accurate imputation of human leukocyte antigens with CookHLA

por Cook, Seungho, Choi, Wanson, Lim, Hyunjoon, Luo, Yang, Kim, Kunhee, Jia, Xiaoming, Raychaudhuri, Soumya, Han, Buhm
Publicado 2021

Maximizing statistical power to detect differentially abundant cell states with scPOST

por Millard, Nghia, Korsunsky, Ilya, Weinand, Kathryn, Fonseka, Chamith Y., Nathan, Aparna, Kang, Joyce B., Raychaudhuri, Soumya
Publicado 2021

Accurately Assessing the Risk of Schizophrenia Conferred by Rare Copy-Number Variation Affecting Genes with Brain Function

por Raychaudhuri, Soumya, Korn, Joshua M., McCarroll, Steven A., Altshuler, David, Sklar, Pamela, Purcell, Shaun, Daly, Mark J.
Publicado 2010

Prescriptive analytics for impulsive behaviour prevention using real-time biometrics

por Raychaudhuri, Soumya Jyoti, Manjunath, Soumya, Srinivasan, Chithra Priya, Swathi, N., Sushma, S., Nitin Bhushan, K. N., Narendra Babu, C.
Publicado 2021

Automated clustering reveals CD4(+) T cell subset imbalances in rheumatoid arthritis

por Mulhearn, Ben, Marshall, Lysette, Sutcliffe, Megan, Hannes, Susan K., Fonseka, Chamith, Hussell, Tracy, Raychaudhuri, Soumya, Barton, Anne, Viatte, Sebastien
Publicado 2023

Proteins Encoded in Genomic Regions Associated with Immune-Mediated Disease Physically Interact and Suggest Underlying Biology

por Rossin, Elizabeth J., Lage, Kasper, Raychaudhuri, Soumya, Xavier, Ramnik J., Tatar, Diana, Benita, Yair, Cotsapas, Chris, Daly, Mark J.
Publicado 2011

Genome-Wide Association Studies Suggest Limited Immune Gene Enrichment in Schizophrenia Compared to 5 Autoimmune Diseases

por Pouget, Jennie G., Gonçalves, Vanessa F., Spain, Sarah L., Finucane, Hilary K., Raychaudhuri, Soumya, Kennedy, James L., Knight, Jo
Publicado 2016

Disproportionate Contributions of Select Genomic Compartments and Cell Types to Genetic Risk for Coronary Artery Disease

por Won, Hong-Hee, Natarajan, Pradeep, Dobbyn, Amanda, Jordan, Daniel M., Roussos, Panos, Lage, Kasper, Raychaudhuri, Soumya, Stahl, Eli, Do, Ron
Publicado 2015

IFN-γ and TNF-α drive a CXCL10+ CCL2+ macrophage phenotype expanded in severe COVID-19 and other diseases with tissue inflammation

por Zhang, Fan, Mears, Joseph R., Shakib, Lorien, Beynor, Jessica I., Shanaj, Sara, Korsunsky, Ilya, Nathan, Aparna, Donlin, Laura T., Raychaudhuri, Soumya
Publicado 2020

IFN-γ and TNF-α drive a CXCL10+ CCL2+ macrophage phenotype expanded in severe COVID-19 lungs and inflammatory diseases with tissue inflammation

por Zhang, Fan, Mears, Joseph R., Shakib, Lorien, Beynor, Jessica I., Shanaj, Sara, Korsunsky, Ilya, Nathan, Aparna, Donlin, Laura T., Raychaudhuri, Soumya
Publicado 2021

Efficient and precise single-cell reference atlas mapping with Symphony

por Kang, Joyce B., Nathan, Aparna, Weinand, Kathryn, Zhang, Fan, Millard, Nghia, Rumker, Laurie, Moody, D. Branch, Korsunsky, Ilya, Raychaudhuri, Soumya
Publicado 2021

Disentangling the Effects of Colocalizing Genomic Annotations to Functionally Prioritize Non-coding Variants within Complex-Trait Loci

por Trynka, Gosia, Westra, Harm-Jan, Slowikowski, Kamil, Hu, Xinli, Xu, Han, Stranger, Barbara E., Klein, Robert J., Han, Buhm, Raychaudhuri, Soumya
Publicado 2015

Fast, sensitive, and accurate integration of single cell data with Harmony

por Korsunsky, Ilya, Millard, Nghia, Fan, Jean, Slowikowski, Kamil, Zhang, Fan, Wei, Kevin, Baglaenko, Yuriy, Brenner, Michael, Loh, Po-ru, Raychaudhuri, Soumya
Publicado 2019

Covarying neighborhood analysis identifies cell populations associated with phenotypes of interest from single-cell transcriptomics

por Reshef, Yakir, Rumker, Laurie, Kang, Joyce B., Nathan, Aparna, Korsunsky, Ilya, Asgari, Samira, Murray, Megan B., Moody, D. Branch, Raychaudhuri, Soumya
Publicado 2022