Supervised learning of gene-regulatory networks based on graph distance profiles of transcriptomics data

por Razaghi-Moghadam, Zahra, Nikoloski, Zoran
Publicado 2020

GeneReg: a constraint-based approach for design of feasible metabolic engineering strategies at the gene level

por Razaghi-Moghadam, Zahra, Nikoloski, Zoran
Publicado 2020

Maximization of non-idle enzymes improves the coverage of the estimated maximal in vivo enzyme catalytic rates in Escherichia coli

por Xu, Rudan, Razaghi-Moghadam, Zahra, Nikoloski, Zoran
Publicado 2021

Maximizing multi-reaction dependencies provides more accurate and precise predictions of intracellular fluxes than the principle of parsimony

por Hashemi, Seirana, Razaghi-Moghadam, Zahra, Nikoloski, Zoran
Publicado 2023

Reaction lumping in metabolic networks for application with thermodynamic metabolic flux analysis

por Seep, Lea, Razaghi-Moghadam, Zahra, Nikoloski, Zoran
Publicado 2021

Identification of flux trade-offs in metabolic networks

por Hashemi, Seirana, Razaghi-Moghadam, Zahra, Nikoloski, Zoran
Publicado 2021

The Essentiality of Reporting Hardy-Weinberg Equilibrium Calculations in Population-Based Genetic Association Studies

por Namipashaki, Atefeh, Razaghi-Moghadam, Zahra, Ansari-Pour, Naser
Publicado 2015

Data integration across conditions improves turnover number estimates and metabolic predictions

por Wendering, Philipp, Arend, Marius, Razaghi-Moghadam, Zahra, Nikoloski, Zoran
Publicado 2023

Integration of relative metabolomics and transcriptomics time-course data in a metabolic model pinpoints effects of ribosome biogenesis defects on Arabidopsis thaliana metabolism

por Pries, Christopher, Razaghi-Moghadam, Zahra, Kopka, Joachim, Nikoloski, Zoran
Publicado 2021

Characterization of effects of genetic variants via genome-scale metabolic modelling

por Tong, Hao, Küken, Anika, Razaghi-Moghadam, Zahra, Nikoloski, Zoran
Publicado 2021

Prediction of metabolite–protein interactions based on integration of machine learning and constraint-based modeling

por Soleymani Babadi, Fayaz, Razaghi-Moghadam, Zahra, Zare-Mirakabad, Fatemeh, Nikoloski, Zoran
Publicado 2023

Relative flux trade-offs and optimization of metabolic network functionalities

por Hashemi, Seirana, Razaghi-Moghadam, Zahra, Laitinen, Roosa A.E., Nikoloski, Zoran
Publicado 2022

Combination of network and molecule structure accurately predicts competitive inhibitory interactions

por Razaghi-Moghadam, Zahra, Sokolowska, Ewelina M., Sowa, Marcin A., Skirycz, Aleksandra, Nikoloski, Zoran
Publicado 2021

Cancerouspdomains: comprehensive analysis of cancer type-specific recurrent somatic mutations in proteins and domains

por Hashemi, Seirana, Nowzari Dalini, Abbas, Jalali, Adrin, Banaei-Moghaddam, Ali Mohammad, Razaghi-Moghadam, Zahra
Publicado 2017

A systematic survey of centrality measures for protein-protein interaction networks

por Ashtiani, Minoo, Salehzadeh-Yazdi, Ali, Razaghi-Moghadam, Zahra, Hennig, Holger, Wolkenhauer, Olaf, Mirzaie, Mehdi, Jafari, Mohieddin
Publicado 2018