Variant effect predictions capture some aspects of deep mutational scanning experiments

por Reeb, Jonas, Wirth, Theresa, Rost, Burkhard
Publicado 2020

Predicted Molecular Effects of Sequence Variants Link to System Level of Disease

por Reeb, Jonas, Hecht, Maximilian, Mahlich, Yannick, Bromberg, Yana, Rost, Burkhard
Publicado 2016

Common sequence variants affect molecular function more than rare variants?

por Mahlich, Yannick, Reeb, Jonas, Hecht, Maximilian, Schelling, Maria, De Beer, Tjaart Andries Petrus, Bromberg, Yana, Rost, Burkhard
Publicado 2017

The landscape of GWAS validation; systematic review identifying 309 validated non-coding variants across 130 human diseases

por Alsheikh, Ammar J., Wollenhaupt, Sabrina, King, Emily A., Reeb, Jonas, Ghosh, Sujana, Stolzenburg, Lindsay R., Tamim, Saleh, Lazar, Jozef, Davis, J. Wade, Jacob, Howard J.
Publicado 2022

Machine learning reveals genetic modifiers of the immune microenvironment of cancer

por Riley-Gillis, Bridget, Tsaih, Shirng-Wern, King, Emily, Wollenhaupt, Sabrina, Reeb, Jonas, Peck, Amy R., Wackman, Kelsey, Lemke, Angela, Rui, Hallgeir, Dezso, Zoltan, Flister, Michael J.
Publicado 2023

LocTree3 prediction of localization

por Goldberg, Tatyana, Hecht, Maximilian, Hamp, Tobias, Karl, Timothy, Yachdav, Guy, Ahmed, Nadeem, Altermann, Uwe, Angerer, Philipp, Ansorge, Sonja, Balasz, Kinga, Bernhofer, Michael, Betz, Alexander, Cizmadija, Laura, Do, Kieu Trinh, Gerke, Julia, Greil, Robert, Joerdens, Vadim, Hastreiter, Maximilian, Hembach, Katharina, Herzog, Max, Kalemanov, Maria, Kluge, Michael, Meier, Alice, Nasir, Hassan, Neumaier, Ulrich, Prade, Verena, Reeb, Jonas, Sorokoumov, Aleksandr, Troshani, Ilira, Vorberg, Susann, Waldraff, Sonja, Zierer, Jonas, Nielsen, Henrik, Rost, Burkhard
Publicado 2014

The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens

por Zhou, Naihui, Jiang, Yuxiang, Bergquist, Timothy R., Lee, Alexandra J., Kacsoh, Balint Z., Crocker, Alex W., Lewis, Kimberley A., Georghiou, George, Nguyen, Huy N., Hamid, Md Nafiz, Davis, Larry, Dogan, Tunca, Atalay, Volkan, Rifaioglu, Ahmet S., Dalkıran, Alperen, Cetin Atalay, Rengul, Zhang, Chengxin, Hurto, Rebecca L., Freddolino, Peter L., Zhang, Yang, Bhat, Prajwal, Supek, Fran, Fernández, José M., Gemovic, Branislava, Perovic, Vladimir R., Davidović, Radoslav S., Sumonja, Neven, Veljkovic, Nevena, Asgari, Ehsaneddin, Mofrad, Mohammad R.K., Profiti, Giuseppe, Savojardo, Castrense, Martelli, Pier Luigi, Casadio, Rita, Boecker, Florian, Schoof, Heiko, Kahanda, Indika, Thurlby, Natalie, McHardy, Alice C., Renaux, Alexandre, Saidi, Rabie, Gough, Julian, Freitas, Alex A., Antczak, Magdalena, Fabris, Fabio, Wass, Mark N., Hou, Jie, Cheng, Jianlin, Wang, Zheng, Romero, Alfonso E., Paccanaro, Alberto, Yang, Haixuan, Goldberg, Tatyana, Zhao, Chenguang, Holm, Liisa, Törönen, Petri, Medlar, Alan J., Zosa, Elaine, Borukhov, Itamar, Novikov, Ilya, Wilkins, Angela, Lichtarge, Olivier, Chi, Po-Han, Tseng, Wei-Cheng, Linial, Michal, Rose, Peter W., Dessimoz, Christophe, Vidulin, Vedrana, Dzeroski, Saso, Sillitoe, Ian, Das, Sayoni, Lees, Jonathan Gill, Jones, David T., Wan, Cen, Cozzetto, Domenico, Fa, Rui, Torres, Mateo, Warwick Vesztrocy, Alex, Rodriguez, Jose Manuel, Tress, Michael L., Frasca, Marco, Notaro, Marco, Grossi, Giuliano, Petrini, Alessandro, Re, Matteo, Valentini, Giorgio, Mesiti, Marco, Roche, Daniel B., Reeb, Jonas, Ritchie, David W., Aridhi, Sabeur, Alborzi, Seyed Ziaeddin, Devignes, Marie-Dominique, Koo, Da Chen Emily, Bonneau, Richard, Gligorijević, Vladimir, Barot, Meet, Fang, Hai, Toppo, Stefano, Lavezzo, Enrico, Falda, Marco, Berselli, Michele, Tosatto, Silvio C.E., Carraro, Marco, Piovesan, Damiano, Ur Rehman, Hafeez, Mao, Qizhong, Zhang, Shanshan, Vucetic, Slobodan, Black, Gage S., Jo, Dane, Suh, Erica, Dayton, Jonathan B., Larsen, Dallas J., Omdahl, Ashton R., McGuffin, Liam J., Brackenridge, Danielle A., Babbitt, Patricia C., Yunes, Jeffrey M., Fontana, Paolo, Zhang, Feng, Zhu, Shanfeng, You, Ronghui, Zhang, Zihan, Dai, Suyang, Yao, Shuwei, Tian, Weidong, Cao, Renzhi, Chandler, Caleb, Amezola, Miguel, Johnson, Devon, Chang, Jia-Ming, Liao, Wen-Hung, Liu, Yi-Wei, Pascarelli, Stefano, Frank, Yotam, Hoehndorf, Robert, Kulmanov, Maxat, Boudellioua, Imane, Politano, Gianfranco, Di Carlo, Stefano, Benso, Alfredo, Hakala, Kai, Ginter, Filip, Mehryary, Farrokh, Kaewphan, Suwisa, Björne, Jari, Moen, Hans, Tolvanen, Martti E.E., Salakoski, Tapio, Kihara, Daisuke, Jain, Aashish, Šmuc, Tomislav, Altenhoff, Adrian, Ben-Hur, Asa, Rost, Burkhard, Brenner, Steven E., Orengo, Christine A., Jeffery, Constance J., Bosco, Giovanni, Hogan, Deborah A., Martin, Maria J., O’Donovan, Claire, Mooney, Sean D., Greene, Casey S., Radivojac, Predrag, Friedberg, Iddo
Publicado 2019