STEME: efficient EM to find motifs in large data sets

por Reid, John E., Wernisch, Lorenz
Publicado 2011

STEME: A Robust, Accurate Motif Finder for Large Data Sets

por Reid, John E., Wernisch, Lorenz
Publicado 2014

Pseudotime estimation: deconfounding single cell time series

por Reid, John E., Wernisch, Lorenz
Publicado 2016

Transcriptional programs: Modelling higher order structure in transcriptional control

por Reid, John E, Ott, Sascha, Wernisch, Lorenz
Publicado 2009

GPseudoRank: a permutation sampler for single cell orderings

por Strauß, Magdalena E, Reid, John E, Wernisch, Lorenz
Publicado 2019

Variable structure motifs for transcription factor binding sites

por Reid, John E, Evans, Kenneth J, Dyer, Nigel, Wernisch, Lorenz, Ott, Sascha
Publicado 2010

GPseudoClust: deconvolution of shared pseudo-profiles at single-cell resolution

por Strauss, Magdalena E, Kirk, Paul D W, Reid, John E, Wernisch, Lorenz
Publicado 2020

Conserved Cis-Regulatory Modules Control Robustness in Msx1 Expression at Single-Cell Resolution

por Vance, Keith W., Woodcock, Dan J., Reid, John E., Bretschneider, Till, Ott, Sascha, Koentges, Georgy
Publicado 2015

Branch-recombinant Gaussian processes for analysis of perturbations in biological time series

por Penfold, Christopher A, Sybirna, Anastasiya, Reid, John E, Huang, Yun, Wernisch, Lorenz, Ghahramani, Zoubin, Grant, Murray, Surani, M Azim
Publicado 2018

Machine learning based classification of cells into chronological stages using single-cell transcriptomics

por Singh, Sumeet Pal, Janjuha, Sharan, Chaudhuri, Samata, Reinhardt, Susanne, Kränkel, Annekathrin, Dietz, Sevina, Eugster, Anne, Bilgin, Halil, Korkmaz, Selçuk, Zararsız, Gökmen, Ninov, Nikolay, Reid, John E.
Publicado 2018