The genomic landscape of cohesin-associated chromatin interactions

por DeMare, Laura E., Leng, Jing, Cotney, Justin, Reilly, Steven K., Yin, Jun, Sarro, Richard, Noonan, James P.
Publicado 2013

Chromatin state signatures associated with tissue-specific gene expression and enhancer activity in the embryonic limb

por Cotney, Justin, Leng, Jing, Oh, Sunghee, DeMare, Laura E., Reilly, Steven K., Gerstein, Mark B., Noonan, James P.
Publicado 2012

Massively parallel discovery of human-specific substitutions that alter enhancer activity

por Uebbing, Severin, Gockley, Jake, Reilly, Steven K., Kocher, Acadia A., Geller, Evan, Gandotra, Neeru, Scharfe, Curt, Cotney, Justin, Noonan, James P.
Publicado 2021

Functional characterization of T2D-associated SNP effects on baseline and ER stress-responsive β cell transcriptional activation

por Khetan, Shubham, Kales, Susan, Kursawe, Romy, Jillette, Alexandria, Ulirsch, Jacob C., Reilly, Steven K., Ucar, Duygu, Tewhey, Ryan, Stitzel, Michael L.
Publicado 2021

Detection of Neanderthal Adaptively Introgressed Genetic Variants That Modulate Reporter Gene Expression in Human Immune Cells

por Jagoda, Evelyn, Xue, James R, Reilly, Steven K, Dannemann, Michael, Racimo, Fernando, Huerta-Sanchez, Emilia, Sankararaman, Sriram, Kelso, Janet, Pagani, Luca, Sabeti, Pardis C, Capellini, Terence D
Publicado 2021

Prioritizing disease and trait causal variants at the TNFAIP3 locus using functional and genomic features

por Ray, John P., de Boer, Carl G., Fulco, Charles P., Lareau, Caleb A., Kanai, Masahiro, Ulirsch, Jacob C., Tewhey, Ryan, Ludwig, Leif S., Reilly, Steven K., Bergman, Drew T., Engreitz, Jesse M., Issner, Robbyn, Finucane, Hilary K., Lander, Eric S., Regev, Aviv, Hacohen, Nir
Publicado 2020

The autism-associated chromatin modifier CHD8 regulates other autism risk genes during human neurodevelopment

por Cotney, Justin, Muhle, Rebecca A., Sanders, Stephan J., Liu, Li, Willsey, A. Jeremy, Niu, Wei, Liu, Wenzhong, Klei, Lambertus, Lei, Jing, Yin, Jun, Reilly, Steven K., Tebbenkamp, Andrew T., Bichsel, Candace, Pletikos, Mihovil, Sestan, Nenad, Roeder, Kathryn, State, Matthew W., Devlin, Bernie, Noonan, James P.
Publicado 2015

DNA spike-ins enable confident interpretation of SARS-CoV-2 genomic data from amplicon-based sequencing

por Lagerborg, Kim A., Normandin, Erica, Bauer, Matthew R., Adams, Gordon, Figueroa, Katherine, Loreth, Christine, Gladden-Young, Adrianne, Shaw, Bennett, Pearlman, Leah, Shenoy, Erica S., Hooper, David, Pierce, Virginia M., Zachary, Kimon C., Park, Daniel J., MacInnis, Bronwyn L., Lemieux, Jacob E., Sabeti, Pardis C., Reilly, Steven K, Siddle, Katherine J.
Publicado 2021

Leveraging Base Pair Mammalian Constraint to Understand Genetic Variation and Human Disease

por Sullivan, Patrick F., Meadows, Jennifer R. S., Gazal, Steven, Phan, BaDoi N., Li, Xue, Genereux, Diane P., Dong, Michael X., Bianchi, Matteo, Andrews, Gregory, Sakthikumar, Sharadha, Nordin, Jessika, Roy, Ananya, Christmas, Matthew J., Marinescu, Voichita D., Wallerman, Ola, Xue, James R., Li, Yun, Yao, Shuyang, Sun, Quan, Szatkiewicz, Jin, Wen, Jia, Huckins, Laura M., Lawler, Alyssa J., Keough, Kathleen C., Zheng, Zhili, Zeng, Jian, Wray, Naomi R., Johnson, Jessica, Chen, Jiawen, Paten, Benedict, Reilly, Steven K., Hughes, Graham M., Weng, Zhiping, Pollard, Katherine S., Pfenning, Andreas R., Forsberg-Nilsson, Karin, Karlsson, Elinor K., Lindblad-Toh, Kerstin
Publicado 2023

Phylogenetic analysis of SARS-CoV-2 in the Boston area highlights the role of recurrent importation and superspreading events.

por Lemieux, Jacob E., Siddle, Katherine J., Shaw, Bennett M., Loreth, Christine, Schaffner, Stephen F., Gladden-Young, Adrianne, Adams, Gordon, Fink, Timelia, Tomkins-Tinch, Christopher H., Krasilnikova, Lydia A., DeRuff, Katherine C., Rudy, Melissa, Bauer, Matthew R., Lagerborg, Kim A., Normandin, Erica, Chapman, Sinead B., Reilly, Steven K., Anahtar, Melis N., Lin, Aaron E., Carter, Amber, Myhrvold, Cameron, Kemball, Molly E., Chaluvadi, Sushma, Cusick, Caroline, Flowers, Katelyn, Neumann, Anna, Cerrato, Felecia, Farhat, Maha, Slater, Damien, Harris, Jason B., Branda, John, Hooper, David, Gaeta, Jessie M., Baggett, Travis P., O’Connell, James, Gnirke, Andreas, Lieberman, Tami D., Philippakis, Anthony, Burns, Meagan, Brown, Catherine M., Luban, Jeremy, Ryan, Edward T., Turbett, Sarah E., LaRocque, Regina C., Hanage, William P., Gallagher, Glen R., Madoff, Lawrence C., Smole, Sandra, Pierce, Virginia M., Rosenberg, Eric, Sabeti, Pardis C., Park, Daniel J., Maclnnis, Bronwyn L.
Publicado 2020

Phylogenetic analysis of SARS-CoV-2 in Boston highlights the impact of superspreading events

por Lemieux, Jacob E., Siddle, Katherine J., Shaw, Bennett M., Loreth, Christine, Schaffner, Stephen F., Gladden-Young, Adrianne, Adams, Gordon, Fink, Timelia, Tomkins-Tinch, Christopher H., Krasilnikova, Lydia A., DeRuff, Katherine C., Rudy, Melissa, Bauer, Matthew R., Lagerborg, Kim A., Normandin, Erica, Chapman, Sinéad B., Reilly, Steven K., Anahtar, Melis N., Lin, Aaron E., Carter, Amber, Myhrvold, Cameron, Kemball, Molly E., Chaluvadi, Sushma, Cusick, Caroline, Flowers, Katelyn, Neumann, Anna, Cerrato, Felecia, Farhat, Maha, Slater, Damien, Harris, Jason B., Branda, John A., Hooper, David, Gaeta, Jessie M., Baggett, Travis P., O’Connell, James, Gnirke, Andreas, Lieberman, Tami D., Philippakis, Anthony, Burns, Meagan, Brown, Catherine M., Luban, Jeremy, Ryan, Edward T., Turbett, Sarah E., LaRocque, Regina C., Hanage, William P., Gallagher, Glen R., Madoff, Lawrence C., Smole, Sandra, Pierce, Virginia M., Rosenberg, Eric, Sabeti, Pardis C., Park, Daniel J., MacInnis, Bronwyn L.
Publicado 2020

Evidence of transmission from fully vaccinated individuals in a large outbreak of the SARS-CoV-2 Delta variant in Provincetown, Massachusetts

por Siddle, Katherine J., Krasilnikova, Lydia A., Moreno, Gage K., Schaffner, Stephen F., Vostok, Johanna, Fitzgerald, Nicholas A., Lemieux, Jacob E., Barkas, Nikolaos, Loreth, Christine, Specht, Ivan, Tomkins-Tinch, Christopher H., Silbert, Jillian, Schaeffer, Beau, Taylor, Bradford P., Loftness, Bryn, Johnson, Hillary, Schubert, Petra L., Shephard, Hanna M., Doucette, Matthew, Fink, Timelia, Lang, Andrew S., Baez, Stephanie, Beauchamp, John, Hennigan, Scott, Buzby, Erika, Ash, Stephanie, Brown, Jessica, Clancy, Selina, Cofsky, Seana, Gagne, Luc, Hall, Joshua, Harrington, Rachel, Gionet, Gabrielle L., DeRuff, Katherine C., Vodzak, Megan E., Adams, Gordon C., Dobbins, Sabrina T., Slack, Sarah D., Reilly, Steven K., Anderson, Lisa M., Cipicchio, Michelle C., DeFelice, Matthew T., Grimsby, Jonna L., Anderson, Scott E., Blumenstiel, Brendan S., Meldrim, James C., Rooke, Heather M., Vicente, Gina, Smith, Natasha L., Messer, Katelyn S., Reagan, Faye L., Mandese, Zoe M., Lee, Matthew D., Ray, Marianne C., Fisher, Marissa E., Ulcena, Maesha A., Nolet, Corey M., English, Sean E., Larkin, Katie L., Vernest, Kyle, Chaluvadi, Sushma, Arvidson, Deirdre, Melchiono, Maurice, Covell, Theresa, Harik, Vaira, Brock-Fisher, Taylor, Dunn, Molly, Kearns, Amanda, Hanage, William P., Bernard, Clare, Philippakis, Anthony, Lennon, Niall J, Gabriel, Stacey B., Gallagher, Glen R., Smole, Sandra, Madoff, Lawrence C., Brown, Catherine M., Park, Daniel J., MacInnis, Bronwyn L., Sabeti, Pardis C.
Publicado 2021

Transmission from vaccinated individuals in a large SARS-CoV-2 Delta variant outbreak

por Siddle, Katherine J., Krasilnikova, Lydia A., Moreno, Gage K., Schaffner, Stephen F., Vostok, Johanna, Fitzgerald, Nicholas A., Lemieux, Jacob E., Barkas, Nikolaos, Loreth, Christine, Specht, Ivan, Tomkins-Tinch, Christopher H., Paull, Jillian S., Schaeffer, Beau, Taylor, Bradford P., Loftness, Bryn, Johnson, Hillary, Schubert, Petra L., Shephard, Hanna M., Doucette, Matthew, Fink, Timelia, Lang, Andrew S., Baez, Stephanie, Beauchamp, John, Hennigan, Scott, Buzby, Erika, Ash, Stephanie, Brown, Jessica, Clancy, Selina, Cofsky, Seana, Gagne, Luc, Hall, Joshua, Harrington, Rachel, Gionet, Gabrielle L., DeRuff, Katherine C., Vodzak, Megan E., Adams, Gordon C., Dobbins, Sabrina T., Slack, Sarah D., Reilly, Steven K., Anderson, Lisa M., Cipicchio, Michelle C., DeFelice, Matthew T., Grimsby, Jonna L., Anderson, Scott E., Blumenstiel, Brendan S., Meldrim, James C., Rooke, Heather M., Vicente, Gina, Smith, Natasha L., Messer, Katelyn S., Reagan, Faye L., Mandese, Zoe M., Lee, Matthew D., Ray, Marianne C., Fisher, Marissa E., Ulcena, Maesha A., Nolet, Corey M., English, Sean E., Larkin, Katie L., Vernest, Kyle, Chaluvadi, Sushma, Arvidson, Deirdre, Melchiono, Maurice, Covell, Theresa, Harik, Vaira, Brock-Fisher, Taylor, Dunn, Molly, Kearns, Amanda, Hanage, William P., Bernard, Clare, Philippakis, Anthony, Lennon, Niall J., Gabriel, Stacey B., Gallagher, Glen R., Smole, Sandra, Madoff, Lawrence C., Brown, Catherine M., Park, Daniel J., MacInnis, Bronwyn L., Sabeti, Pardis C.
Publicado 2022