Incorporation of Noncanonical Amino Acids into Rosetta and Use in Computational Protein-Peptide Interface Design

por Renfrew, P. Douglas, Choi, Eun Jung, Bonneau, Richard, Kuhlman, Brian
Publicado 2012

The 2010 Rosetta Developers Meeting: Macromolecular Prediction and Design Meets Reproducible Publishing

por Renfrew, P. Douglas, Campbell, Gabrielle, Strauss, Charlie E. M., Bonneau, Richard
Publicado 2011

A Rotamer Library to Enable Modeling and Design of Peptoid Foldamers

por Renfrew, P. Douglas, Craven, Timothy W., Butterfoss, Glenn L., Kirshenbaum, Kent, Bonneau, Richard
Publicado 2014

An adaptive geometric search algorithm for macromolecular scaffold selection

por Jiang, Tian, Renfrew, P Douglas, Drew, Kevin, Youngs, Noah, Butterfoss, Glenn L, Bonneau, Richard, Shasha, Den Nis
Publicado 2018

Engineered multivalent self-assembled binder protein against SARS-CoV-2 RBD

por Britton, Dustin, Punia, Kamia, Mahmoudinobar, Farbod, Tada, Takuya, Jiang, Xunqing, Renfrew, P. Douglas, Bonneau, Richard, Landau, Nathaniel R., Kong, Xiang-Peng, Montclare, Jin Kim
Publicado 2022

Structure-based protein function prediction using graph convolutional networks

por Gligorijević, Vladimir, Renfrew, P. Douglas, Kosciolek, Tomasz, Leman, Julia Koehler, Berenberg, Daniel, Vatanen, Tommi, Chandler, Chris, Taylor, Bryn C., Fisk, Ian M., Vlamakis, Hera, Xavier, Ramnik J., Knight, Rob, Cho, Kyunghyun, Bonneau, Richard
Publicado 2021

Sequence-structure-function relationships in the microbial protein universe

por Koehler Leman, Julia, Szczerbiak, Pawel, Renfrew, P. Douglas, Gligorijevic, Vladimir, Berenberg, Daniel, Vatanen, Tommi, Taylor, Bryn C., Chandler, Chris, Janssen, Stefan, Pataki, Andras, Carriero, Nick, Fisk, Ian, Xavier, Ramnik J., Knight, Rob, Bonneau, Richard, Kosciolek, Tomasz
Publicado 2023

Serverification of Molecular Modeling Applications: The Rosetta Online Server That Includes Everyone (ROSIE)

por Lyskov, Sergey, Chou, Fang-Chieh, Conchúir, Shane Ó., Der, Bryan S., Drew, Kevin, Kuroda, Daisuke, Xu, Jianqing, Weitzner, Brian D., Renfrew, P. Douglas, Sripakdeevong, Parin, Borgo, Benjamin, Havranek, James J., Kuhlman, Brian, Kortemme, Tanja, Bonneau, Richard, Gray, Jeffrey J., Das, Rhiju
Publicado 2013

Computationally designed peptide macrocycle inhibitors of New Delhi metallo-β-lactamase 1

por Mulligan, Vikram Khipple, Workman, Sean, Sun, Tianjun, Rettie, Stephen, Li, Xinting, Worrall, Liam J., Craven, Timothy W., King, Dustin T., Hosseinzadeh, Parisa, Watkins, Andrew M., Renfrew, P. Douglas, Guffy, Sharon, Labonte, Jason W., Moretti, Rocco, Bonneau, Richard, Strynadka, Natalie C. J., Baker, David
Publicado 2021

Adding Diverse Noncanonical Backbones to Rosetta: Enabling Peptidomimetic Design

por Drew, Kevin, Renfrew, P. Douglas, Craven, Timothy W., Butterfoss, Glenn L., Chou, Fang-Chieh, Lyskov, Sergey, Bullock, Brooke N., Watkins, Andrew, Labonte, Jason W., Pacella, Michael, Kilambi, Krishna Praneeth, Leaver-Fay, Andrew, Kuhlman, Brian, Gray, Jeffrey J., Bradley, Philip, Kirshenbaum, Kent, Arora, Paramjit S., Das, Rhiju, Bonneau, Richard
Publicado 2013

Better together: Elements of successful scientific software development in a distributed collaborative community

por Koehler Leman, Julia, Weitzner, Brian D., Renfrew, P. Douglas, Lewis, Steven M., Moretti, Rocco, Watkins, Andrew M., Mulligan, Vikram Khipple, Lyskov, Sergey, Adolf-Bryfogle, Jared, Labonte, Jason W., Krys, Justyna, Bystroff, Christopher, Schief, William, Gront, Dominik, Schueler-Furman, Ora, Baker, David, Bradley, Philip, Dunbrack, Roland, Kortemme, Tanja, Leaver-Fay, Andrew, Strauss, Charlie E. M., Meiler, Jens, Kuhlman, Brian, Gray, Jeffrey J., Bonneau, Richard
Publicado 2020