Molecular and computational approaches to map regulatory elements in 3D chromatin structure

por Lee, Beoung Hun, Rhie, Suhn K.
Publicado 2021

Correction: Characterizing chromatin interactions of regulatory elements and nucleosome positions, using Hi‑C, Micro‑C, and promoter capture Micro‑C

por Lee, Beoung Hun, Wu, Zexun, Rhie, Suhn K.
Publicado 2023

The Enigmatic HOX Genes: Can We Crack Their Code?

por Luo, Zhifei, Rhie, Suhn K., Farnham, Peggy J.
Publicado 2019

Characterizing chromatin interactions of regulatory elements and nucleosome positions, using Hi-C, Micro-C, and promoter capture Micro-C

por Lee, Beoung Hun, Wu, Zexun, Rhie, Suhn K.
Publicado 2022

Genomic, epigenomic, and transcriptomic signatures of prostate cancer between African American and European American patients

por Stevens, Claire, Hightower, Alexandria, Buxbaum, Sarah G., Falzarano, Sara M., Rhie, Suhn K.
Publicado 2023

FunciSNP: an R/bioconductor tool integrating functional non-coding data sets with genetic association studies to identify candidate regulatory SNPs

por Coetzee, Simon G., Rhie, Suhn K., Berman, Benjamin P., Coetzee, Gerhard A., Noushmehr, Houtan
Publicado 2012

Nucleosome positioning and histone modifications define relationships between regulatory elements and nearby gene expression in breast epithelial cells

por Rhie, Suhn Kyong, Hazelett, Dennis J, Coetzee, Simon G, Yan, Chunli, Noushmehr, Houtan, Coetzee, Gerhard A
Publicado 2014

Characterizing and Targeting Genes Regulated by Transcription Factor MYBL2 in Lung Adenocarcinoma Cells

por Lee, Yuri, Wu, Zexun, Yang, Seolyn, Schreiner, Shannon M., Gonzalez-Smith, Leonardo D., Rhie, Suhn K.
Publicado 2022

CRISPR-mediated deletion of prostate cancer risk-associated CTCF loop anchors identifies repressive chromatin loops

por Guo, Yu, Perez, Andrew A., Hazelett, Dennis J., Coetzee, Gerhard A., Rhie, Suhn Kyong, Farnham, Peggy J.
Publicado 2018

A high-resolution 3D epigenomic map reveals insights into the creation of the prostate cancer transcriptome

por Rhie, Suhn Kyong, Perez, Andrew A., Lay, Fides D., Schreiner, Shannon, Shi, Jiani, Polin, Jenevieve, Farnham, Peggy J.
Publicado 2019

Comprehensive Functional Annotation of Seventy-One Breast Cancer Risk Loci

por Rhie, Suhn Kyong, Coetzee, Simon G., Noushmehr, Houtan, Yan, Chunli, Kim, Jae Mun, Haiman, Christopher A., Coetzee, Gerhard A.
Publicado 2013

ZFX acts as a transcriptional activator in multiple types of human tumors by binding downstream from transcription start sites at the majority of CpG island promoters

por Rhie, Suhn Kyong, Yao, Lijun, Luo, Zhifei, Witt, Heather, Schreiner, Shannon, Guo, Yu, Perez, Andrew A., Farnham, Peggy J.
Publicado 2018

m(6)A epitranscriptome analysis reveals differentially methylated transcripts that drive early chemoresistance in bladder cancer

por Hodara, Emmanuelle, Mades, Aubree, Swartz, Lisa, Iqbal, Maheen, Xu, Tong, Bsteh, Daniel, Farnham, Peggy J, Rhie, Suhn K, Goldkorn, Amir
Publicado 2023

Identification of activated enhancers and linked transcription factors in breast, prostate, and kidney tumors by tracing enhancer networks using epigenetic traits

por Rhie, Suhn Kyong, Guo, Yu, Tak, Yu Gyoung, Yao, Lijing, Shen, Hui, Coetzee, Gerhard A., Laird, Peter W., Farnham, Peggy J.
Publicado 2016

FOXC1 Binds Enhancers and Promotes Cisplatin Resistance in Bladder Cancer

por Lu, Yi-Tsung, Xu, Tong, Iqbal, Maheen, Hsieh, Tien-Chan, Luo, Zhifei, Liang, Gangning, Farnham, Peggy J., Rhie, Suhn K., Goldkorn, Amir
Publicado 2022

TENET 2.0: Identification of key transcriptional regulators and enhancers in lung adenocarcinoma

por Mullen, Daniel J., Yan, Chunli, Kang, Diane S., Zhou, Beiyun, Borok, Zea, Marconett, Crystal N., Farnham, Peggy J., Offringa, Ite A., Rhie, Suhn Kyong
Publicado 2020

VprBP directs epigenetic gene silencing through histone H2A phosphorylation in colon cancer

por Ghate, Nikhil Baban, Kim, Sangnam, Spiller, Erin, Kim, Sungmin, Shin, Yonghwan, Rhie, Suhn K., Smbatyan, Goar, Lenz, Heinz‐Josef, Mumenthaler, Shannon M., An, Woojin
Publicado 2021

Myogenic Akt signaling upregulates the utrophin–glycoprotein complex and promotes sarcolemma stability in muscular dystrophy

por Peter, Angela K., Ko, Christopher Y., Kim, Michelle H., Hsu, Nigel, Ouchi, Noriyuki, Rhie, Suhn, Izumiya, Yasuhiro, Zeng, Ling, Walsh, Kenneth, Crosbie, Rachelle H.
Publicado 2009

The prostate cancer risk variant rs55958994 regulates multiple gene expression through extreme long-range chromatin interaction to control tumor progression

por Qian, Yuyang, Zhang, Lei, Cai, Mingyang, Li, Hongxia, Xu, Heming, Yang, Hongzhen, Zhao, Zhongfang, Rhie, Suhn Kyong, Farnham, Peggy J., Shi, Jiandang, Lu, Wange
Publicado 2019

Ezh2-dCas9 and KRAB-dCas9 enable engineering of epigenetic memory in a context-dependent manner

por O’Geen, Henriette, Bates, Sofie L., Carter, Sakereh S., Nisson, Karly A., Halmai, Julian, Fink, Kyle D., Rhie, Suhn K., Farnham, Peggy J., Segal, David J.
Publicado 2019