Allelic Entropy and Times until Loss or Fixation of Neutral Polymorphisms

por Ferretti, Luca, Ribeca, Paolo
Publicado 2023

CARGO: effective format-free compressed storage of genomic information

por Roguski, Łukasz, Ribeca, Paolo
Publicado 2016

The Site Frequency/Dosage Spectrum of Autopolyploid Populations

por Ferretti, Luca, Ribeca, Paolo, Ramos-Onsins, Sebastian E.
Publicado 2018

Bovine Derived in vitro Cultures Generate Heterogeneous Populations of Antigen Presenting Cells

por Guzman, Efrain, Pujol, Myriam, Ribeca, Paolo, Montoya, Maria
Publicado 2019

Distinguishing imported cases from locally acquired cases within a geographically limited genomic sample of an infectious disease

por Didelot, Xavier, Helekal, David, Kendall, Michelle, Ribeca, Paolo
Publicado 2022

SiNPle: Fast and Sensitive Variant Calling for Deep Sequencing Data

por Ferretti, Luca, Tennakoon, Chandana, Silesian, Adrian, Freimanis, Graham, Ribeca, Paolo
Publicado 2019

Pervasive Differential Splicing in Marek’s Disease Virus Can Discriminate CVI-988 Vaccine Strain from RB-1B Very Virulent Strain in Chicken Embryonic Fibroblasts

por Sadigh, Yashar, Tahiri-Alaoui, Abdessamad, Spatz, Stephen, Nair, Venugopal, Ribeca, Paolo
Publicado 2020

Modelling and simulating generic RNA-Seq experiments with the flux simulator

por Griebel, Thasso, Zacher, Benedikt, Ribeca, Paolo, Raineri, Emanuele, Lacroix, Vincent, Guigó, Roderic, Sammeth, Michael
Publicado 2012

Full genome sequencing of archived wild type and vaccine rinderpest virus isolates prior to their destruction

por King, Simon, Rajko-Nenow, Paulina, Ropiak, Honorata M., Ribeca, Paolo, Batten, Carrie, Baron, Michael D.
Publicado 2020

Engineered Promoter-Switched Viruses Reveal the Role of Poxvirus Maturation Protein A26 as a Negative Regulator of Viral Spread

por Holley, Joe, Sumner, Rebecca P., Lant, Sian, Ribeca, Paolo, Ulaeto, David, Maluquer de Motes, Carlos
Publicado 2021

Fast Computation and Applications of Genome Mappability

por Derrien, Thomas, Estellé, Jordi, Marco Sola, Santiago, Knowles, David G., Raineri, Emanuele, Guigó, Roderic, Ribeca, Paolo
Publicado 2012

Whole genome de novo sequencing and comparative genomic analyses suggests that Chlamydia psittaci strain 84/2334 should be reclassified as Chlamydia abortus species

por Longbottom, David, Livingstone, Morag, Ribeca, Paolo, Beeckman, Delphine Sylvie Anne, van der Ende, Arie, Pannekoek, Yvonne, Vanrompay, Daisy
Publicado 2021

Transcriptomic Profiling of Dromedary Camels Immunised with a MERS Vaccine Candidate

por Hala, Sharif, Ribeca, Paolo, Aljami, Haya A., Alsagaby, Suliman A., Qasim, Ibrahim, Gilbert, Sarah C., Alharbi, Naif Khalaf
Publicado 2021

A Systematic Evaluation of High-Throughput Sequencing Approaches to Identify Low-Frequency Single Nucleotide Variants in Viral Populations

por King, David J., Freimanis, Graham, Lasecka-Dykes, Lidia, Asfor, Amin, Ribeca, Paolo, Waters, Ryan, King, Donald P., Laing, Emma
Publicado 2020

Characterization of a P1-bacteriophage-like plasmid (phage-plasmid) harbouring bla (CTX-M-15) in Salmonella enterica serovar Typhi

por Greig, David R., Bird, Matthew T., Chattaway, Marie Anne, Langridge, Gemma C., Waters, Emma V., Ribeca, Paolo, Jenkins, Claire, Nair, Satheesh
Publicado 2022

ChimPipe: accurate detection of fusion genes and transcription-induced chimeras from RNA-seq data

por Rodríguez-Martín, Bernardo, Palumbo, Emilio, Marco-Sola, Santiago, Griebel, Thasso, Ribeca, Paolo, Alonso, Graciela, Rastrojo, Alberto, Aguado, Begoña, Guigó, Roderic, Djebali, Sarah
Publicado 2017

Pervasive within-host recombination and epistasis as major determinants of the molecular evolution of the foot-and-mouth disease virus capsid

por Ferretti, Luca, Pérez-Martín, Eva, Zhang, Fuquan, Maree, François, de Klerk-Lorist, Lin-Mari, van Schalkwykc, Louis, Juleff, Nicholas D., Charleston, Bryan, Ribeca, Paolo
Publicado 2020

Correction: Pervasive within-host recombination and epistasis as major determinants of the molecular evolution of the foot-and-mouth disease virus capsid

por Ferretti, Luca, Pérez-Martín, Eva, Zhang, Fuquan, Maree, François, de Klerk-Lorist, Lin-Mari, van Schalkwykc, Louis, Juleff, Nicholas D., Charleston, Bryan, Ribeca, Paolo
Publicado 2020

Within-Host Recombination in the Foot-and-Mouth Disease Virus Genome

por Ferretti, Luca, Di Nardo, Antonello, Singer, Benjamin, Lasecka-Dykes, Lidia, Logan, Grace, Wright, Caroline F., Pérez-Martín, Eva, King, Donald P., Tuthill, Tobias J., Ribeca, Paolo
Publicado 2018

Mass Die-Off of Saiga Antelopes, Kazakhstan, 2015

por Fereidouni, Sasan, Freimanis, Graham L., Orynbayev, Mukhit, Ribeca, Paolo, Flannery, John, King, Donald P., Zuther, Steffen, Beer, Martin, Höper, Dirk, Kydyrmanov, Aidyn, Karamendin, Kobey, Kock, Richard
Publicado 2019