Initiation of mtDNA transcription is followed by pausing, and diverges across human cell types and during evolution

por Blumberg, Amit, Rice, Edward J., Kundaje, Anshul, Danko, Charles G., Mishmar, Dan
Publicado 2017

Genetic dissection of the RNA polymerase II transcription cycle

por Chou, Shao-Pei, Alexander, Adriana K, Rice, Edward J, Choate, Lauren A, Danko, Charles G
Publicado 2022

RNA Pol II pausing facilitates phased pluripotency transitions by buffering transcription

por Abuhashem, Abderhman, Chivu, Alexandra G., Zhao, Yixin, Rice, Edward J., Siepel, Adam, Danko, Charles G., Hadjantonakis, Anna-Katerina
Publicado 2022

Identification and prediction of developmental enhancers in sea urchin embryos

por Arenas-Mena, César, Miljovska, Sofija, Rice, Edward J., Gurges, Justin, Shashikant, Tanvi, Wang, Zihe, Ercan, Sevinç, Danko, Charles G.
Publicado 2021

GDNF-RET signaling and EGR1 form a positive feedback loop that promotes tamoxifen resistance via cyclin D1

por Marks, Brooke A., Pipia, Ilissa M., Mukai, Chinatsu, Horibata, Sachi, Rice, Edward J., Danko, Charles G., Coonrod, Scott A.
Publicado 2023

A bi-stable feedback loop between GDNF, EGR1, and ERα contribute to endocrine resistant breast cancer

por Horibata, Sachi, Rice, Edward J., Zheng, Hui, Mukai, Chinatsu, Chu, Tinyi, Marks, Brooke A., Coonrod, Scott A., Danko, Charles G.
Publicado 2018

Characterizing RNA stability genome-wide through combined analysis of PRO-seq and RNA-seq data

por Blumberg, Amit, Zhao, Yixin, Huang, Yi-Fei, Dukler, Noah, Rice, Edward J., Chivu, Alexandra G., Krumholz, Katie, Danko, Charles G., Siepel, Adam
Publicado 2021

ER-positive breast cancer cells are poised for RET-mediated endocrine resistance

por Horibata, Sachi, Rice, Edward J., Mukai, Chinatsu, Marks, Brooke A., Sams, Kelly, Zheng, Hui, Anguish, Lynne J., Coonrod, Scott A., Danko, Charles G.
Publicado 2018

Multiple stages of evolutionary change in anthrax toxin receptor expression in humans

por Choate, Lauren A., Barshad, Gilad, McMahon, Pierce W., Said, Iskander, Rice, Edward J., Munn, Paul R., Lewis, James J., Danko, Charles G.
Publicado 2021

Enhanced transcription and translation in clay hydrogel and implications for early life evolution

por Yang, Dayong, Peng, Songming, Hartman, Mark R., Gupton-Campolongo, Tiffany, Rice, Edward J., Chang, Anna Kathryn, Gu, Zi, Lu, G. Q. (Max), Luo, Dan
Publicado 2013

A-MYB and BRDT-dependent RNA Polymerase II pause release orchestrates transcriptional regulation in mammalian meiosis

por Alexander, Adriana K., Rice, Edward J., Lujic, Jelena, Simon, Leah E., Tanis, Stephanie, Barshad, Gilad, Zhu, Lina, Lama, Jyoti, Cohen, Paula E., Danko, Charles G.
Publicado 2023

Chromatin run-on and sequencing maps the transcriptional regulatory landscape of glioblastoma multiforme

por Chu, Tinyi, Rice, Edward J., Booth, Gregory T., Salamanca, H. Hans, Wang, Zhong, Core, Leighton J., Longo, Sharon L, Corona, Robert J., Chin, Lawrence S., Lis, John T., Kwak, Hojoong, Danko, Charles G.
Publicado 2018

Chromatin run-on sequencing analysis finds that ECM remodeling plays an important role in canine hemangiosarcoma pathogenesis

por Mukai, Chinatsu, Choi, Eunju, Sams, Kelly L., Klampen, Elena Zu, Anguish, Lynne, Marks, Brooke A., Rice, Edward J., Wang, Zhong, Choate, Lauren A., Chou, Shao-Pei, Kato, Yukinari, Miller, Andrew D., Danko, Charles G., Coonrod, Scott A.
Publicado 2020

XX Disorder of Sex Development is associated with an insertion on chromosome 9 and downregulation of RSPO1 in dogs (Canis lupus familiaris)

por Meyers-Wallen, Vicki N., Boyko, Adam R., Danko, Charles G., Grenier, Jennifer K., Mezey, Jason G., Hayward, Jessica J., Shannon, Laura M., Gao, Chuan, Shafquat, Afrah, Rice, Edward J., Pujar, Shashikant, Eggers, Stefanie, Ohnesorg, Thomas, Sinclair, Andrew H.
Publicado 2017

Prediction of histone post-translational modification patterns based on nascent transcription data

por Wang, Zhong, Chivu, Alexandra G., Choate, Lauren A., Rice, Edward J., Miller, Donald C., Chu, Tinyi, Chou, Shao-Pei, Kingsley, Nicole B., Petersen, Jessica L., Finno, Carrie J., Bellone, Rebecca R., Antczak, Douglas F., Lis, John T., Danko, Charles G.
Publicado 2022

Evolution of promoter-proximal pausing enabled a new layer of transcription control

por Chivu, Alexandra G., Abuhashem, Abderhman, Barshad, Gilad, Rice, Edward J., Leger, Michelle M., Vill, Albert C., Wong, Wilfred, Brady, Rebecca, Smith, Jeramiah J., Wikramanayake, Athula H., Arenas-Mena, César, Brito, Ilana L., Ruiz-Trillo, Iñaki, Hadjantonakis, Anna-Katerina, Lis, John T., Lewis, James J., Danko, Charles G.
Publicado 2023