Assessing key decisions for transcriptomic data integration in biochemical networks

por Richelle, Anne, Joshi, Chintan, Lewis, Nathan E.
Publicado 2019

Increasing consensus of context-specific metabolic models by integrating data-inferred cell functions

por Richelle, Anne, Chiang, Austin W. T., Kuo, Chih-Chung, Lewis, Nathan E.
Publicado 2019

Time Integrated Flux Analysis: Exploiting the Concentration Measurements Directly for Cost-Effective Metabolic Network Flux Analysis

por Portela, Rui M. C., Richelle, Anne, Dumas, Patrick, von Stosch, Moritz
Publicado 2019

Model-based intensification of CHO cell cultures: One-step strategy from fed-batch to perfusion

por Richelle, Anne, Corbett, Brandon, Agarwal, Piyush, Vernersson, Anton, Trygg, Johan, McCready, Chris
Publicado 2022

Dynamic resource allocation drives growth under nitrogen starvation in eukaryotes

por Tibocha-Bonilla, Juan D., Kumar, Manish, Richelle, Anne, Godoy-Silva, Rubén D., Zengler, Karsten, Zuñiga, Cristal
Publicado 2020

StanDep: Capturing transcriptomic variability improves context-specific metabolic models

por Joshi, Chintan J., Schinn, Song-Min, Richelle, Anne, Shamie, Isaac, O’Rourke, Eyleen J., Lewis, Nathan E.
Publicado 2020

Correction: StanDep: Capturing transcriptomic variability improves context-specific metabolic models

por Joshi, Chintan J., Schinn, Song-Min, Richelle, Anne, Shamie, Isaac, O’Rourke, Eyleen J., Lewis, Nathan E.
Publicado 2022

Towards a widespread adoption of metabolic modeling tools in biopharmaceutical industry: a process systems biology engineering perspective

por Richelle, Anne, David, Blandine, Demaegd, Didier, Dewerchin, Marianne, Kinet, Romain, Morreale, Angelo, Portela, Rui, Zune, Quentin, von Stosch, Moritz
Publicado 2020

Coordinate regulation of systemic and kidney tryptophan metabolism by the drug transporters OAT1 and OAT3

por Granados, Jeffry C., Richelle, Anne, Gutierrez, Jahir M., Zhang, Patrick, Zhang, Xinlian, Bhatnagar, Vibha, Lewis, Nathan E., Nigam, Sanjay K.
Publicado 2021

ImmCellFie: A user-friendly web-based platform to infer metabolic function from omics data

por Masson, Helen O., Borland, David, Reilly, Jason, Telleria, Adrian, Shrivastava, Shalki, Watson, Matt, Bustillos, Luthfi, Li, Zerong, Capps, Laura, Kellman, Benjamin P., King, Zachary A., Richelle, Anne, Lewis, Nathan E., Robasky, Kimberly
Publicado 2023

Elucidating Human Milk Oligosaccharide biosynthetic genes through network-based multi-omics integration

por Kellman, Benjamin P., Richelle, Anne, Yang, Jeong-Yeh, Chapla, Digantkumar, Chiang, Austin W. T., Najera, Julia A., Liang, Chenguang, Fürst, Annalee, Bao, Bokan, Koga, Natalia, Mohammad, Mahmoud A., Bruntse, Anders Bech, Haymond, Morey W., Moremen, Kelley W., Bode, Lars, Lewis, Nathan E.
Publicado 2022

Model-based assessment of mammalian cell metabolic functionalities using omics data

por Richelle, Anne, Kellman, Benjamin P., Wenzel, Alexander T., Chiang, Austin W.T., Reagan, Tyler, Gutierrez, Jahir M., Joshi, Chintan, Li, Shangzhong, Liu, Joanne K., Masson, Helen, Lee, Jooyong, Li, Zerong, Heirendt, Laurent, Trefois, Christophe, Juarez, Edwin F., Bath, Tyler, Borland, David, Mesirov, Jill P., Robasky, Kimberly, Lewis, Nathan E.
Publicado 2021

MEMOTE for standardized genome-scale metabolic model testing

por Lieven, Christian, Beber, Moritz E., Olivier, Brett G., Bergmann, Frank T., Ataman, Meric, Babaei, Parizad, Bartell, Jennifer A., Blank, Lars M., Chauhan, Siddharth, Correia, Kevin, Diener, Christian, Dräger, Andreas, Ebert, Birgitta E., Edirisinghe, Janaka N., Faria, José P., Feist, Adam M., Fengos, Georgios, Fleming, Ronan M. T., García-Jiménez, Beatriz, Hatzimanikatis, Vassily, van Helvoirt, Wout, Henry, Christopher S., Hermjakob, Henning, Herrgård, Markus J., Kaafarani, Ali, Kim, Hyun Uk, King, Zachary, Klamt, Steffen, Klipp, Edda, Koehorst, Jasper J., König, Matthias, Lakshmanan, Meiyappan, Lee, Dong-Yup, Lee, Sang Yup, Lee, Sunjae, Lewis, Nathan E., Liu, Filipe, Ma, Hongwu, Machado, Daniel, Mahadevan, Radhakrishnan, Maia, Paulo, Mardinoglu, Adil, Medlock, Gregory L., Monk, Jonathan M., Nielsen, Jens, Nielsen, Lars Keld, Nogales, Juan, Nookaew, Intawat, Palsson, Bernhard O., Papin, Jason A., Patil, Kiran R., Poolman, Mark, Price, Nathan D., Resendis-Antonio, Osbaldo, Richelle, Anne, Rocha, Isabel, Sánchez, Benjamín J., Schaap, Peter J., Malik Sheriff, Rahuman S., Shoaie, Saeed, Sonnenschein, Nikolaus, Teusink, Bas, Vilaça, Paulo, Vik, Jon Olav, Wodke, Judith A. H., Xavier, Joana C., Yuan, Qianqian, Zakhartsev, Maksim, Zhang, Cheng
Publicado 2020

Publisher Correction: MEMOTE for standardized genome-scale metabolic model testing

por Lieven, Christian, Beber, Moritz E., Olivier, Brett G., Bergmann, Frank T., Ataman, Meric, Babaei, Parizad, Bartell, Jennifer A., Blank, Lars M., Chauhan, Siddharth, Correia, Kevin, Diener, Christian, Dräger, Andreas, Ebert, Birgitta E., Edirisinghe, Janaka N., Faria, José P., Feist, Adam M., Fengos, Georgios, Fleming, Ronan M. T., García-Jiménez, Beatriz, Hatzimanikatis, Vassily, van Helvoirt, Wout, Henry, Christopher S., Hermjakob, Henning, Herrgård, Markus J., Kaafarani, Ali, Kim, Hyun Uk, King, Zachary, Klamt, Steffen, Klipp, Edda, Koehorst, Jasper J., König, Matthias, Lakshmanan, Meiyappan, Lee, Dong-Yup, Lee, Sang Yup, Lee, Sunjae, Lewis, Nathan E., Liu, Filipe, Ma, Hongwu, Machado, Daniel, Mahadevan, Radhakrishnan, Maia, Paulo, Mardinoglu, Adil, Medlock, Gregory L., Monk, Jonathan M., Nielsen, Jens, Nielsen, Lars Keld, Nogales, Juan, Nookaew, Intawat, Palsson, Bernhard O., Papin, Jason A., Patil, Kiran R., Poolman, Mark, Price, Nathan D., Resendis-Antonio, Osbaldo, Richelle, Anne, Rocha, Isabel, Sánchez, Benjamín J., Schaap, Peter J., Sheriff, Rahuman S. Malik, Shoaie, Saeed, Sonnenschein, Nikolaus, Teusink, Bas, Vilaça, Paulo, Vik, Jon Olav, Wodke, Judith A. H., Xavier, Joana C., Yuan, Qianqian, Zakhartsev, Maksim, Zhang, Cheng
Publicado 2020