VALOR2: characterization of large-scale structural variants using linked-reads

por Karaoğlanoğlu, Fatih, Ricketts, Camir, Ebren, Ezgi, Rasekh, Marzieh Eslami, Hajirasouliha, Iman, Alkan, Can
Publicado 2020

Identification of Strain-Specific Sequences That Distinguish a Mycoplasma gallisepticum Vaccine Strain from Field Isolates

por Ricketts, Camir, Pickler, Larissa, Maurer, John, Ayyampalayam, Saravanaraj, García, Maricarmen, Ferguson-Noel, Naola M.
Publicado 2016

Inferring cancer progression from Single-Cell Sequencing while allowing mutation losses

por Ciccolella, Simone, Ricketts, Camir, Soto Gomez, Mauricio, Patterson, Murray, Silverbush, Dana, Bonizzoni, Paola, Hajirasouliha, Iman, Della Vedova, Gianluca
Publicado 2020

PhISCS: a combinatorial approach for subperfect tumor phylogeny reconstruction via integrative use of single-cell and bulk sequencing data

por Malikic, Salem, Mehrabadi, Farid Rashidi, Ciccolella, Simone, Rahman, Md. Khaledur, Ricketts, Camir, Haghshenas, Ehsan, Seidman, Daniel, Hach, Faraz, Hajirasouliha, Iman, Sahinalp, S. Cenk
Publicado 2019

A Deep Learning Approach to Diagnostic Classification of Prostate Cancer Using Pathology–Radiology Fusion

por Khosravi, Pegah, Lysandrou, Maria, Eljalby, Mahmoud, Li, Qianzi, Kazemi, Ehsan, Zisimopoulos, Pantelis, Sigaras, Alexandros, Brendel, Matthew, Barnes, Josue, Ricketts, Camir, Meleshko, Dmitry, Yat, Andy, McClure, Timothy D., Robinson, Brian D., Sboner, Andrea, Elemento, Olivier, Chughtai, Bilal, Hajirasouliha, Iman
Publicado 2021

A robust benchmark for detection of germline large deletions and insertions

por Zook, Justin M., Hansen, Nancy F., Olson, Nathan D., Chapman, Lesley M., Mullikin, James C., Xiao, Chunlin, Sherry, Stephen, Koren, Sergey, Phillippy, Adam M., Boutros, Paul C., Sahraeian, Sayed Mohammad E., Huang, Vincent, Rouette, Alexandre, Alexander, Noah, Mason, Christopher E., Hajirasouliha, Iman, Ricketts, Camir, Lee, Joyce, Tearle, Rick, Fiddes, Ian T., Barrio, Alvaro Martinez, Wala, Jeremiah, Carroll, Andrew, Ghaffari, Noushin, Rodriguez, Oscar L., Bashir, Ali, Jackman, Shaun, Farrell, John J, Wenger, Aaron M, Alkan, Can, Soylev, Arda, Schatz, Michael C., Garg, Shilpa, Church, George, Marschall, Tobias, Chen, Ken, Fan, Xian, English, Adam C., Rosenfeld, Jeffrey A., Zhou, Weichen, Mills, Ryan E., Sage, Jay M., Davis, Jennifer R., Kaiser, Michael D., Oliver, John S., Catalano, Anthony P., Chaisson, Mark JP, Spies, Noah, Sedlazeck, Fritz J., Salit, Marc
Publicado 2020