Beyond classification: gene-family phylogenies from shotgun metagenomic reads enable accurate community analysis

por Riesenfeld, Samantha J, Pollard, Katherine S
Publicado 2013

Dissection and Integration of Bursty Transcriptional Dynamics for Complex Systems

por Gao, Cheng Frank, Vaikuntanathan, Suriyanarayanan, Riesenfeld, Samantha J.
Publicado 2023

Genomics through the lens of next-generation sequencing

por Capra, John A, Carbone, Lucia, Riesenfeld, Samantha J, Wall, Jeffrey D
Publicado 2010

EmptyDrops: distinguishing cells from empty droplets in droplet-based single-cell RNA sequencing data

por Lun, Aaron T. L., Riesenfeld, Samantha, Andrews, Tallulah, Dao, The Phuong, Gomes, Tomas, Marioni, John C.
Publicado 2019

PhylOTU: A High-Throughput Procedure Quantifies Microbial Community Diversity and Resolves Novel Taxa from Metagenomic Data

por Sharpton, Thomas J., Riesenfeld, Samantha J., Kembel, Steven W., Ladau, Joshua, O'Dwyer, James P., Green, Jessica L., Eisen, Jonathan A., Pollard, Katherine S.
Publicado 2011

A compact, in vivo screen of all 6-mers reveals drivers of tissue-specific expression and guides synthetic regulatory element design

por Smith, Robin P, Riesenfeld, Samantha J, Holloway, Alisha K, Li, Qiang, Murphy, Karl K, Feliciano, Natalie M, Orecchia, Lorenzo, Oksenberg, Nir, Pollard, Katherine S, Ahituv, Nadav
Publicado 2013

Mouse fetal growth restriction through parental and fetal immune gene variation and intercellular communications cascade

por Kaur, Gurman, Porter, Caroline B. M., Ashenberg, Orr, Lee, Jack, Riesenfeld, Samantha J., Hofree, Matan, Aggelakopoulou, Maria, Subramanian, Ayshwarya, Kuttikkatte, Subita Balaram, Attfield, Kathrine E., Desel, Christiane A. E., Davies, Jessica L., Evans, Hayley G., Avraham-Davidi, Inbal, Nguyen, Lan T., Dionne, Danielle A., Neumann, Anna E., Jensen, Lise Torp, Barber, Thomas R., Soilleux, Elizabeth, Carrington, Mary, McVean, Gil, Rozenblatt-Rosen, Orit, Regev, Aviv, Fugger, Lars
Publicado 2022

Skin-resident innate lymphoid cells converge on a pathogenic effector state

por Bielecki, Piotr, Riesenfeld, Samantha J., Hütter, Jan-Christian, Triglia, Elena Torlai, Kowalczyk, Monika S., Ricardo-Gonzalez, Roberto R., Lian, Mi, Vesely, Maria C. Amezcua, Kroehling, Lina, Xu, Hao, Slyper, Michal, Muus, Christoph, Ludwig, Leif S., Christian, Elena, Tao, Liming, Kedaigle, Amanda J., Steach, Holly R., York, Autumn G., Skadow, Mathias H., Yaghoubi, Parastou, Dionne, Danielle, Jarret, Abigail, McGee, Heather M., Porter, Caroline B. M., Licona-Limón, Paula, Bailis, Will, Jackson, Ruaidhrí, Gagliani, Nicola, Gasteiger, Georg, Locksley, Richard M., Regev, Aviv, Flavell, Richard A.
Publicado 2021