Structure-based pKa prediction provides a thermodynamic basis for the role of histidines in pH-induced conformational transitions in dengue virus

por Chaudhury, Sidhartha, Ripoll, Daniel R., Wallqvist, Anders
Publicado 2015

Molecular Simulations Reveal the Role of Antibody Fine Specificity and Viral Maturation State on Antibody-Dependent Enhancement of Infection in Dengue Virus

por Ripoll, Daniel R., Wallqvist, Anders, Chaudhury, Sidhartha
Publicado 2019

Using the antibody-antigen binding interface to train image-based deep neural networks for antibody-epitope classification

por Ripoll, Daniel R., Chaudhury, Sidhartha, Wallqvist, Anders
Publicado 2021

Module evolution and substrate specificity of fungal nonribosomal peptide synthetases involved in siderophore biosynthesis

por Bushley, Kathryn E, Ripoll, Daniel R, Turgeon, B Gillian
Publicado 2008

Dengue virus antibody database: Systematically linking serotype-specificity with epitope mapping in dengue virus

por Chaudhury, Sidhartha, Gromowski, Gregory D., Ripoll, Daniel R., Khavrutskii, Ilja V., Desai, Valmik, Wallqvist, Anders
Publicado 2017

Combinatorial peptide-based epitope mapping from Ebola virus DNA vaccines and infections reveals residue-level determinants of antibody binding

por Ripoll, Daniel R., Mitchell, Daniel A. J., Dupuy, Lesley C., Wallqvist, Anders, Schmaljohn, Connie, Chaudhury, Sidhartha
Publicado 2017

Quantitative Predictions of Binding Free Energy Changes in Drug-Resistant Influenza Neuraminidase

por Ripoll, Daniel R., Khavrutskii, Ilja V., Chaudhury, Sidhartha, Liu, Jin, Kuschner, Robert A., Wallqvist, Anders, Reifman, Jaques
Publicado 2012

Tracing the Origin of the Fungal α1 Domain Places Its Ancestor in the HMG-Box Superfamily: Implication for Fungal Mating-Type Evolution

por Martin, Tom, Lu, Shun-Wen, van Tilbeurgh, Herman, Ripoll, Daniel R., Dixelius, Christina, Turgeon, B. Gillian, Debuchy, Robert
Publicado 2010

Topology of Type II REases revisited; structural classes and the common conserved core

por Niv, Masha Y., Ripoll, Daniel R., Vila, Jorge A., Liwo, Adam, Vanamee, Éva S., Aggarwal, Aneel K., Weinstein, Harel, Scheraga, Harold A.
Publicado 2007

Epitope mapping of Ebola virus dominant and subdominant glycoprotein epitopes facilitates construction of an epitope-based DNA vaccine able to focus the antibody response in mice

por Mitchell, Daniel A. J., Dupuy, Lesley C., Sanchez-Lockhart, Mariano, Palacios, Gustavo, Back, Jaap W., Shimanovskaya, Katya, Chaudhury, Sidhartha, Ripoll, Daniel R., Wallqvist, Anders, Schmaljohn, Connie S.
Publicado 2017

Novel plant-derived recombinant human interferons with broad spectrum antiviral activity

por Koehler, Jeffrey W., Dupuy, Lesley C., Garrison, Aura R., Beitzel, Brett F., Richards, Michelle J., Ripoll, Daniel R., Wallqvist, Anders, Teh, Shia-Yen, Vaewhongs, Andrew A., Vojdani, Fakhrieh S., Padgett, Hal S., Schmaljohn, Connie S.
Publicado 2011

A Fusion-Inhibiting Peptide against Rift Valley Fever Virus Inhibits Multiple, Diverse Viruses

por Koehler, Jeffrey W., Smith, Jeffrey M., Ripoll, Daniel R., Spik, Kristin W., Taylor, Shannon L., Badger, Catherine V., Grant, Rebecca J., Ogg, Monica M., Wallqvist, Anders, Guttieri, Mary C., Garry, Robert F., Schmaljohn, Connie S.
Publicado 2013