In-silico identification of phenotype-biased functional modules

por Padmanabhan, Kanchana, Wilson, Kevin, Rocha, Andrea M, Wang, Kuangyu, Mihelcic, James R, Samatova, Nagiza F
Publicado 2012

DENSE: efficient and prior knowledge-driven discovery of phenotype-associated protein functional modules

por Hendrix, Willam, Rocha, Andrea M, Padmanabhan, Kanchana, Choudhary, Alok, Scott, Kathleen, Mihelcic, James R, Samatova, Nagiza F
Publicado 2011

Spice: discovery of phenotype-determining component interplays

por Chen, Zhengzhang, Padmanabhan, Kanchana, Rocha, Andrea M, Shpanskaya, Yekaterina, Mihelcic, James R, Scott, Kathleen, Samatova, Nagiza F
Publicado 2012

Efficient α, β-motif finder for identification of phenotype-related functional modules

por Schmidt, Matthew C, Rocha, Andrea M, Padmanabhan, Kanchana, Chen, Zhengzhang, Scott, Kathleen, Mihelcic, James R, Samatova, Nagiza F
Publicado 2011

NIBBS-Search for Fast and Accurate Prediction of Phenotype-Biased Metabolic Systems

por Schmidt, Matthew C., Rocha, Andrea M., Padmanabhan, Kanchana, Shpanskaya, Yekaterina, Banfield, Jill, Scott, Kathleen, Mihelcic, James R., Samatova, Nagiza F.
Publicado 2012

Construction of Viable Soil Defined Media Using Quantitative Metabolomics Analysis of Soil Metabolites

por Jenkins, Stefan, Swenson, Tami L., Lau, Rebecca, Rocha, Andrea M., Aaring, Alex, Hazen, Terry C., Chakraborty, Romy, Northen, Trent R.
Publicado 2017

Large Circular Plasmids from Groundwater Plasmidomes Span Multiple Incompatibility Groups and Are Enriched in Multimetal Resistance Genes

por Kothari, Ankita, Wu, Yu-Wei, Chandonia, John-Marc, Charrier, Marimikel, Rajeev, Lara, Rocha, Andrea M., Joyner, Dominique C., Hazen, Terry C., Singer, Steven W., Mukhopadhyay, Aindrila
Publicado 2019

Small and mighty: adaptation of superphylum Patescibacteria to groundwater environment drives their genome simplicity

por Tian, Renmao, Ning, Daliang, He, Zhili, Zhang, Ping, Spencer, Sarah J., Gao, Shuhong, Shi, Weiling, Wu, Linwei, Zhang, Ya, Yang, Yunfeng, Adams, Benjamin G., Rocha, Andrea M., Detienne, Brittny L., Lowe, Kenneth A., Joyner, Dominique C., Klingeman, Dawn M., Arkin, Adam P., Fields, Matthew W., Hazen, Terry C., Stahl, David A., Alm, Eric J., Zhou, Jizhong
Publicado 2020

Microbial Functional Gene Diversity Predicts Groundwater Contamination and Ecosystem Functioning

por He, Zhili, Zhang, Ping, Wu, Linwei, Rocha, Andrea M., Tu, Qichao, Shi, Zhou, Wu, Bo, Qin, Yujia, Wang, Jianjun, Yan, Qingyun, Curtis, Daniel, Ning, Daliang, Van Nostrand, Joy D., Wu, Liyou, Yang, Yunfeng, Elias, Dwayne A., Watson, David B., Adams, Michael W. W., Fields, Matthew W., Alm, Eric J., Hazen, Terry C., Adams, Paul D., Arkin, Adam P., Zhou, Jizhong
Publicado 2018

Natural Bacterial Communities Serve as Quantitative Geochemical Biosensors

por Smith, Mark B., Rocha, Andrea M., Smillie, Chris S., Olesen, Scott W., Paradis, Charles, Wu, Liyou, Campbell, James H., Fortney, Julian L., Mehlhorn, Tonia L., Lowe, Kenneth A., Earles, Jennifer E., Phillips, Jana, Techtmann, Steve M., Joyner, Dominique C., Elias, Dwayne A., Bailey, Kathryn L., Hurt, Richard A., Preheim, Sarah P., Sanders, Matthew C., Yang, Joy, Mueller, Marcella A., Brooks, Scott, Watson, David B., Zhang, Ping, He, Zhili, Dubinsky, Eric A., Adams, Paul D., Arkin, Adam P., Fields, Matthew W., Zhou, Jizhong, Alm, Eric J., Hazen, Terry C.
Publicado 2015