A novel bifunctional transcriptional regulator of riboflavin metabolism in Archaea

por Rodionova, Irina A., Vetting, Matthew W., Li, Xiaoqing, Almo, Steven C., Osterman, Andrei L., Rodionov, Dmitry A.
Publicado 2017

Transcriptional regulation of the carbohydrate utilization network in Thermotoga maritima

por Rodionov, Dmitry A., Rodionova, Irina A., Li, Xiaoqing, Ravcheev, Dmitry A., Tarasova, Yekaterina, Portnoy, Vasiliy A., Zengler, Karsten, Osterman, Andrei L.
Publicado 2013

Identification of a transcription factor, PunR, that regulates the purine and purine nucleoside transporter punC in E. coli

por Rodionova, Irina A., Gao, Ye, Sastry, Anand, Hefner, Ying, Lim, Hyun Gyu, Rodionov, Dmitry A., Saier, Milton H., Palsson, Bernhard O.
Publicado 2021

E. coli allantoinase is activated by the downstream metabolic enzyme, glycerate kinase, and stabilizes the putative allantoin transporter by direct binding

por Rodionova, Irina A., Hosseinnia, Ali, Kim, Sunyoung, Goodacre, Norman, Zhang, Li, Zhang, Zhongge, Palsson, Bernhard, Uetz, Peter, Babu, Mohan, Saier, Milton H.
Publicado 2023

Transcriptional regulation of NAD metabolism in bacteria: genomic reconstruction of NiaR (YrxA) regulon

por Rodionov, Dmitry A., Li, Xiaoqing, Rodionova, Irina A., Yang, Chen, Sorci, Leonardo, Dervyn, Etienne, Martynowski, Dariusz, Zhang, Hong, Gelfand, Mikhail S., Osterman, Andrei L.
Publicado 2008

Evolution of transcriptional regulation of histidine metabolism in Gram-positive bacteria

por Ashniev, German A., Sernova, Natalia V., Shevkoplias, Aleksei E., Rodionov, Ivan D., Rodionova, Irina A., Vitreschak, Alexey G., Gelfand, Mikhail S., Rodionov, Dmitry A.
Publicado 2022

Comparative genomics and functional analysis of rhamnose catabolic pathways and regulons in bacteria

por Rodionova, Irina A., Li, Xiaoqing, Thiel, Vera, Stolyar, Sergey, Stanton, Krista, Fredrickson, James K., Bryant, Donald A., Osterman, Andrei L., Best, Aaron A., Rodionov, Dmitry A.
Publicado 2013

A systems approach discovers the role and characteristics of seven LysR type transcription factors in Escherichia coli

por Rodionova, Irina A., Gao, Ye, Monk, Jonathan, Hefner, Ying, Wong, Nicholas, Szubin, Richard, Lim, Hyun Gyu, Rodionov, Dmitry A., Zhang, Zhongge, Saier, Milton H., Palsson, Bernhard O.
Publicado 2022

Metabolic and Bactericidal Effects of Targeted Suppression of NadD and NadE Enzymes in Mycobacteria

por Rodionova, Irina A., Schuster, Brian M., Guinn, Kristine M., Sorci, Leonardo, Scott, David A., Li, Xiaoqing, Kheterpal, Indu, Shoen, Carolyn, Cynamon, Michael, Locher, Christopher, Rubin, Eric J., Osterman, Andrei L.
Publicado 2014

Genomic encyclopedia of sugar utilization pathways in the Shewanella genus

por Rodionov, Dmitry A, Yang, Chen, Li, Xiaoqing, Rodionova, Irina A, Wang, Yanbing, Obraztsova, Anna Y, Zagnitko, Olga P, Overbeek, Ross, Romine, Margaret F, Reed, Samantha, Fredrickson, James K, Nealson, Kenneth H, Osterman, Andrei L
Publicado 2010

Comparative genomic reconstruction of transcriptional networks controlling central metabolism in the Shewanella genus

por Rodionov, Dmitry A, Novichkov, Pavel S, Stavrovskaya, Elena D, Rodionova, Irina A, Li, Xiaoqing, Kazanov, Marat D, Ravcheev, Dmitry A, Gerasimova, Anna V, Kazakov, Alexey E, Kovaleva, Galina Yu, Permina, Elizabeth A, Laikova, Olga N, Overbeek, Ross, Romine, Margaret F, Fredrickson, James K, Arkin, Adam P, Dubchak, Inna, Osterman, Andrei L, Gelfand, Mikhail S
Publicado 2011

Transcriptional Regulation of Plant Biomass Degradation and Carbohydrate Utilization Genes in the Extreme Thermophile Caldicellulosiruptor bescii

por Rodionov, Dmitry A., Rodionova, Irina A., Rodionov, Vladimir A., Arzamasov, Aleksandr A., Zhang, Ke, Rubinstein, Gabriel M., Tanwee, Tania N. N., Bing, Ryan G., Crosby, James R., Nookaew, Intawat, Basen, Mirko, Brown, Steven D., Wilson, Charlotte M., Klingeman, Dawn M., Poole, Farris L., Zhang, Ying, Kelly, Robert M., Adams, Michael W. W.
Publicado 2021

A roadmap for the functional annotation of protein families: a community perspective

por de Crécy-lagard, Valérie, Amorin de Hegedus, Rocio, Arighi, Cecilia, Babor, Jill, Bateman, Alex, Blaby, Ian, Blaby-Haas, Crysten, Bridge, Alan J, Burley, Stephen K, Cleveland, Stacey, Colwell, Lucy J, Conesa, Ana, Dallago, Christian, Danchin, Antoine, de Waard, Anita, Deutschbauer, Adam, Dias, Raquel, Ding, Yousong, Fang, Gang, Friedberg, Iddo, Gerlt, John, Goldford, Joshua, Gorelik, Mark, Gyori, Benjamin M, Henry, Christopher, Hutinet, Geoffrey, Jaroch, Marshall, Karp, Peter D, Kondratova, Liudmyla, Lu, Zhiyong, Marchler-Bauer, Aron, Martin, Maria-Jesus, McWhite, Claire, Moghe, Gaurav D, Monaghan, Paul, Morgat, Anne, Mungall, Christopher J, Natale, Darren A, Nelson, William C, O’Donoghue, Seán, Orengo, Christine, O’Toole, Katherine H, Radivojac, Predrag, Reed, Colbie, Roberts, Richard J, Rodionov, Dmitri, Rodionova, Irina A, Rudolf, Jeffrey D, Saleh, Lana, Sheynkman, Gloria, Thibaud-Nissen, Francoise, Thomas, Paul D, Uetz, Peter, Vallenet, David, Carter, Erica Watson, Weigele, Peter R, Wood, Valerie, Wood-Charlson, Elisha M, Xu, Jin
Publicado 2022

The COMBREX Project: Design, Methodology, and Initial Results

por Anton, Brian P., Chang, Yi-Chien, Brown, Peter, Choi, Han-Pil, Faller, Lina L., Guleria, Jyotsna, Hu, Zhenjun, Klitgord, Niels, Levy-Moonshine, Ami, Maksad, Almaz, Mazumdar, Varun, McGettrick, Mark, Osmani, Lais, Pokrzywa, Revonda, Rachlin, John, Swaminathan, Rajeswari, Allen, Benjamin, Housman, Genevieve, Monahan, Caitlin, Rochussen, Krista, Tao, Kevin, Bhagwat, Ashok S., Brenner, Steven E., Columbus, Linda, de Crécy-Lagard, Valérie, Ferguson, Donald, Fomenkov, Alexey, Gadda, Giovanni, Morgan, Richard D., Osterman, Andrei L., Rodionov, Dmitry A., Rodionova, Irina A., Rudd, Kenneth E., Söll, Dieter, Spain, James, Xu, Shuang-yong, Bateman, Alex, Blumenthal, Robert M., Bollinger, J. Martin, Chang, Woo-Suk, Ferrer, Manuel, Friedberg, Iddo, Galperin, Michael Y., Gobeill, Julien, Haft, Daniel, Hunt, John, Karp, Peter, Klimke, William, Krebs, Carsten, Macelis, Dana, Madupu, Ramana, Martin, Maria J., Miller, Jeffrey H., O'Donovan, Claire, Palsson, Bernhard, Ruch, Patrick, Setterdahl, Aaron, Sutton, Granger, Tate, John, Yakunin, Alexander, Tchigvintsev, Dmitri, Plata, Germán, Hu, Jie, Greiner, Russell, Horn, David, Sjölander, Kimmen, Salzberg, Steven L., Vitkup, Dennis, Letovsky, Stanley, Segrè, Daniel, DeLisi, Charles, Roberts, Richard J., Steffen, Martin, Kasif, Simon
Publicado 2013