MyTaxa: an advanced taxonomic classifier for genomic and metagenomic sequences

por Luo, Chengwei, Rodriguez-R, Luis M., Konstantinidis, Konstantinos T.
Publicado 2014

ROCker: accurate detection and quantification of target genes in short-read metagenomic data sets by modeling sliding-window bitscores

por Orellana, Luis H., Rodriguez-R, Luis M., Konstantinidis, Konstantinos T.
Publicado 2017

Strengths and Limitations of 16S rRNA Gene Amplicon Sequencing in Revealing Temporal Microbial Community Dynamics

por Poretsky, Rachel, Rodriguez-R, Luis M., Luo, Chengwei, Tsementzi, Despina, Konstantinidis, Konstantinos T.
Publicado 2014

High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries

por Jain, Chirag, Rodriguez-R, Luis M., Phillippy, Adam M., Konstantinidis, Konstantinos T., Aluru, Srinivas
Publicado 2018

Reply to: “Re-evaluating the evidence for a universal genetic boundary among microbial species”

por Rodriguez-R, Luis M., Jain, Chirag, Conrad, Roth E., Aluru, Srinivas, Konstantinidis, Konstantinos T.
Publicado 2021

Nonpareil 3: Fast Estimation of Metagenomic Coverage and Sequence Diversity

por Rodriguez-R, Luis M., Gunturu, Santosh, Tiedje, James M., Cole, James R., Konstantinidis, Konstantinos T.
Publicado 2018

RecruitPlotEasy: An Advanced Read Recruitment Plot Tool for Assessing Metagenomic Population Abundance and Genetic Diversity

por Gerhardt, Kenji, Ruiz-Perez, Carlos A., Rodriguez-R, Luis M., Conrad, Roth E., Konstantinidis, Konstantinos T.
Publicado 2022

Genomes-based phylogeny of the genus Xanthomonas

por Rodriguez-R, Luis M, Grajales, Alejandro, Arrieta-Ortiz, Mario L, Salazar, Camilo, Restrepo, Silvia, Bernal, Adriana
Publicado 2012

Model-based Comparisons of the Abundance Dynamics of Bacterial Communities in Two Lakes

por Dam, Phuongan, Rodriguez-R, Luis M., Luo, Chengwei, Hatt, Janet, Tsementzi, Despina, Konstantinidis, Konstantinos T., Voit, Eberhard O.
Publicado 2020

An Improved Method for TAL Effectors DNA-Binding Sites Prediction Reveals Functional Convergence in TAL Repertoires of Xanthomonas oryzae Strains

por Pérez-Quintero, Alvaro L., Rodriguez-R, Luis M., Dereeper, Alexis, López, Camilo, Koebnik, Ralf, Szurek, Boris, Cunnac, Sebastien
Publicado 2013

The Microbial Genomes Atlas (MiGA) webserver: taxonomic and gene diversity analysis of Archaea and Bacteria at the whole genome level

por Rodriguez-R, Luis M, Gunturu, Santosh, Harvey, William T, Rosselló-Mora, Ramon, Tiedje, James M, Cole, James R, Konstantinidis, Konstantinos T
Publicado 2018

imGLAD: accurate detection and quantification of target organisms in metagenomes

por Castro, Juan C., Rodriguez-R, Luis M., Harvey, William T., Weigand, Michael R., Hatt, Janet K., Carter, Michelle Q., Konstantinidis, Konstantinos T.
Publicado 2018

Beach sand oil spills select for generalist microbial populations

por Heritier-Robbins, Patrick, Karthikeyan, Smruthi, Hatt, Janet K., Kim, Minjae, Huettel, Markus, Kostka, Joel E., Konstantinidis, Konstantinos T., Rodriguez-R, Luis M.
Publicado 2021

An RNAi in silico approach to find an optimal shRNA cocktail against HIV-1

por Méndez-Ortega, María C, Restrepo, Silvia, Rodríguez-R, Luis M, Pérez, Iván, Mendoza, Juan C, Martínez, Andrés P, Sierra, Roberto, Rey-Benito, Gloria J
Publicado 2010

Draft Genome Sequence of Bacillus cereus LA2007, a Human-Pathogenic Isolate Harboring Anthrax-Like Plasmids

por Pena-Gonzalez, Angela, Marston, Chung K., Rodriguez-R, Luis M., Kolton, Cari B., Garcia-Diaz, Julia, Theppote, Amanda, Frace, Michael, Konstantinidis, Konstantinos T., Hoffmaster, Alex R.
Publicado 2017

Novel bacterial taxa in a minimal lignocellulolytic consortium and their potential for lignin and plastics transformation

por Díaz Rodríguez, Carlos Andrés, Díaz-García, Laura, Bunk, Boyke, Spröer, Cathrin, Herrera, Katherine, Tarazona, Natalia A., Rodriguez-R, Luis M., Overmann, Jörg, Jiménez, Diego Javier
Publicado 2022

Discovery of Phytophthora infestans Genes Expressed in Planta through Mining of cDNA Libraries

por Sierra, Roberto, Rodríguez-R, Luis M., Chaves, Diego, Pinzón, Andrés, Grajales, Alejandro, Rojas, Alejandro, Mutis, Gabriel, Cárdenas, Martha, Burbano, Daniel, Jiménez, Pedro, Bernal, Adriana, Restrepo, Silvia
Publicado 2010

Genomic Characterization and Copy Number Variation of Bacillus anthracis Plasmids pXO1 and pXO2 in a Historical Collection of 412 Strains

por Pena-Gonzalez, Angela, Rodriguez-R, Luis M., Marston, Chung K., Gee, Jay E., Gulvik, Christopher A., Kolton, Cari B., Saile, Elke, Frace, Michael, Hoffmaster, Alex R., Konstantinidis, Konstantinos T.
Publicado 2018

Higher pathogen load in children from Mozambique vs. USA revealed by comparative fecal microbiome profiling

por Kim, Minjae, Rodriguez-R, Luis M., Hatt, Janet K., Kayali, Osman, Nalá, Rassul, Dunlop, Anne L., Brennan, Patricia A., Corwin, Elizabeth, Smith, Alicia K., Brown, Joe, Konstantinidis, Konstantinos T.
Publicado 2022

Metagenomics Reveals Pervasive Bacterial Populations and Reduced Community Diversity across the Alaska Tundra Ecosystem

por Johnston, Eric R., Rodriguez-R, Luis M., Luo, Chengwei, Yuan, Mengting M., Wu, Liyou, He, Zhili, Schuur, Edward A. G., Luo, Yiqi, Tiedje, James M., Zhou, Jizhong, Konstantinidis, Konstantinos T.
Publicado 2016