Human-Gut Phages Harbor Sporulation Genes

por Schwartz, Daniel A., Rodríguez-Ramos, Josué A., Shaffer, Michael, Flynn, Rory M., Daly, Rebecca A., Wrighton, Kelly C., Lennon, Jay T.
Publicado 2023

Towards optimized viral metagenomes for double-stranded and single-stranded DNA viruses from challenging soils

por Trubl, Gareth, Roux, Simon, Solonenko, Natalie, Li, Yueh-Fen, Bolduc, Benjamin, Rodríguez-Ramos, Josué, Eloe-Fadrosh, Emiley A., Rich, Virginia I., Sullivan, Matthew B.
Publicado 2019

Exposing new taxonomic variation with inflammation — a murine model-specific genome database for gut microbiome researchers

por Leleiwi, Ikaia, Rodriguez-Ramos, Josué, Shaffer, Michael, Sabag-Daigle, Anice, Kokkinias, Katherine, Flynn, Rory M., Daly, Rebecca A., Kop, Linnea F. M., Solden, Lindsey M., Ahmer, Brian M. M., Borton, Mikayla A., Wrighton, Kelly C.
Publicado 2023

Genome-Resolved Metaproteomics Decodes the Microbial and Viral Contributions to Coupled Carbon and Nitrogen Cycling in River Sediments

por Rodríguez-Ramos, Josué A., Borton, Mikayla A., McGivern, Bridget B., Smith, Garrett J., Solden, Lindsey M., Shaffer, Michael, Daly, Rebecca A., Purvine, Samuel O., Nicora, Carrie D., Eder, Elizabeth K., Lipton, Mary, Hoyt, David W., Stegen, James C., Wrighton, Kelly C.
Publicado 2022

DRAM for distilling microbial metabolism to automate the curation of microbiome function

por Shaffer, Michael, Borton, Mikayla A, McGivern, Bridget B, Zayed, Ahmed A, La Rosa, Sabina Leanti, Solden, Lindsey M, Liu, Pengfei, Narrowe, Adrienne B, Rodríguez-Ramos, Josué, Bolduc, Benjamin, Gazitúa, M Consuelo, Daly, Rebecca A, Smith, Garrett J, Vik, Dean R, Pope, Phil B, Sullivan, Matthew B, Roux, Simon, Wrighton, Kelly C
Publicado 2020