CSM-Potential: mapping protein interactions and biological ligands in 3D space using geometric deep learning

por Rodrigues, Carlos H M, Ascher, David B
Publicado 2022

CSM-Toxin: A Web-Server for Predicting Protein Toxicity

por Morozov, Vladimir, Rodrigues, Carlos H. M., Ascher, David B.
Publicado 2023

mCSM-membrane: predicting the effects of mutations on transmembrane proteins

por Pires, Douglas E V, Rodrigues, Carlos H M, Ascher, David B
Publicado 2020

DynaMut2: Assessing changes in stability and flexibility upon single and multiple point missense mutations

por Rodrigues, Carlos H.M., Pires, Douglas E.V., Ascher, David B.
Publicado 2020

mmCSM-PPI: predicting the effects of multiple point mutations on protein–protein interactions

por Rodrigues, Carlos H M, Pires, Douglas E V, Ascher, David B
Publicado 2021

mCSM-PPI2: predicting the effects of mutations on protein–protein interactions

por Rodrigues, Carlos H M, Myung, Yoochan, Pires, Douglas E V, Ascher, David B
Publicado 2019

Structure guided prediction of Pyrazinamide resistance mutations in pncA

por Karmakar, Malancha, Rodrigues, Carlos H. M., Horan, Kristy, Denholm, Justin T., Ascher, David B.
Publicado 2020

Structural landscapes of PPI interfaces

por Rodrigues, Carlos H M, Pires, Douglas E V, Blundell, Tom L, Ascher, David B
Publicado 2022

DDMut: predicting effects of mutations on protein stability using deep learning

por Zhou, Yunzhuo, Pan, Qisheng, Pires, Douglas E V, Rodrigues, Carlos H M, Ascher, David B
Publicado 2023

HGDiscovery: An online tool providing functional and phenotypic information on novel variants of homogentisate 1,2- dioxigenase

por Karmakar, Malancha, Cicaloni, Vittoria, Rodrigues, Carlos H.M., Spiga, Ottavia, Santucci, Annalisa, Ascher, David B.
Publicado 2022

CSM‐peptides: A computational approach to rapid identification of therapeutic peptides

por Rodrigues, Carlos H. M., Garg, Anjali, Keizer, David, Pires, Douglas E. V., Ascher, David B.
Publicado 2022

DockNet: high-throughput protein–protein interface contact prediction

por Williams, Nathan P, Rodrigues, Carlos H M, Truong, Jia, Ascher, David B, Holien, Jessica K
Publicado 2022

Empirical ways to identify novel Bedaquiline resistance mutations in AtpE

por Karmakar, Malancha, Rodrigues, Carlos H. M., Holt, Kathryn E., Dunstan, Sarah J., Denholm, Justin, Ascher, David B.
Publicado 2019

LEGO-CSM: a tool for functional characterization of proteins

por Nguyen, Thanh Binh, de Sá, Alex G C, Rodrigues, Carlos H M, Pires, Douglas E V, Ascher, David B
Publicado 2023

Structure-guided machine learning prediction of drug resistance mutations in Abelson 1 kinase

por Zhou, Yunzhuo, Portelli, Stephanie, Pat, Megan, Rodrigues, Carlos H.M., Nguyen, Thanh-Binh, Pires, Douglas E.V., Ascher, David B.
Publicado 2021

MTR3D: identifying regions within protein tertiary structures under purifying selection

por Silk, Michael, Pires, Douglas E V, Rodrigues, Carlos H M, D’Souza, Elston N, Olshansky, Moshe, Thorne, Natalie, Ascher, David B
Publicado 2021

kinCSM: Using graph‐based signatures to predict small molecule CDK2 inhibitors

por Zhou, Yunzhuo, Al‐Jarf, Raghad, Alavi, Azadeh, Nguyen, Thanh Binh, Rodrigues, Carlos H. M., Pires, Douglas E. V., Ascher, David B.
Publicado 2022

Computational saturation mutagenesis to predict structural consequences of systematic mutations in the beta subunit of RNA polymerase in Mycobacterium leprae

por Vedithi, Sundeep Chaitanya, Rodrigues, Carlos H.M., Portelli, Stephanie, Skwark, Marcin J., Das, Madhusmita, Ascher, David B., Blundell, Tom L., Malhotra, Sony
Publicado 2020

Author Correction: Exploring the structural distribution of genetic variation in SARS-CoV-2 with the COVID-3D online resource

por Portelli, Stephanie, Olshansky, Moshe, Rodrigues, Carlos H. M., D’Souza, Elston N., Myung, Yoochan, Silk, Michael, Alavi, Azadeh, Pires, Douglas E. V., Ascher, David B.
Publicado 2021

Applying Sodium Carbonate Extraction Mass Spectrometry to Investigate Defects in the Mitochondrial Respiratory Chain

por Robinson, David R. L., Hock, Daniella H., Muellner-Wong, Linden, Kugapreethan, Roopasingam, Reljic, Boris, Surgenor, Elliot E., Rodrigues, Carlos H. M., Caruana, Nikeisha J., Stroud, David A.
Publicado 2022