Genome-wide protein localization prediction strategies for gram negative bacteria

por Romine, Margaret F
Publicado 2011

Genomic Reconstruction of Carbohydrate Utilization Capacities in Microbial-Mat Derived Consortia

por Leyn, Semen A., Maezato, Yukari, Romine, Margaret F., Rodionov, Dmitry A.
Publicado 2017

Conservation of Transcription Start Sites within Genes across a Bacterial Genus

por Shao, Wenjun, Price, Morgan N., Deutschbauer, Adam M., Romine, Margaret F., Arkin, Adam P.
Publicado 2014

Comparisons of Shewanella strains based on genome annotations, modeling, and experiments

por Ong, Wai Kit, Vu, Trang T, Lovendahl, Klaus N, Llull, Jenna M, Serres, Margrethe H, Romine, Margaret F, Reed, Jennifer L
Publicado 2014

Fnr (EtrA) acts as a fine-tuning regulator of anaerobic metabolism in Shewanella oneidensis MR-1

por Cruz-García, Claribel, Murray, Alison E, Rodrigues, Jorge LM, Gralnick, Jeffrey A, McCue, Lee Ann, Romine, Margaret F, Löffler, Frank E, Tiedje, James M
Publicado 2011

Shewanella knowledgebase: integration of the experimental data and computational predictions suggests a biological role for transcription of intergenic regions

por Karpinets, Tatiana V., Romine, Margaret F., Schmoyer, Denise D., Kora, Guruprasad H., Syed, Mustafa H., Leuze, Michael R., Serres, Margrethe H., Park, Byung H., Samatova, Nagiza F., Uberbacher, Edward C.
Publicado 2010

Ecophysiology of an uncultivated lineage of Aigarchaeota from an oxic, hot spring filamentous ‘streamer' community

por Beam, Jacob P, Jay, Zackary J, Schmid, Markus C, Rusch, Douglas B, Romine, Margaret F, M Jennings, Ryan de, Kozubal, Mark A, Tringe, Susannah G, Wagner, Michael, Inskeep, William P
Publicado 2016

Multi-Omic Dynamics Associate Oxygenic Photosynthesis with Nitrogenase-Mediated H(2) Production in Cyanothece sp. ATCC 51142

por Bernstein, Hans C., Charania, Moiz A., McClure, Ryan S., Sadler, Natalie C., Melnicki, Matthew R., Hill, Eric A., Markillie, Lye Meng, Nicora, Carrie D., Wright, Aaron T., Romine, Margaret F., Beliaev, Alexander S.
Publicado 2015

Predicting Species-Resolved Macronutrient Acquisition during Succession in a Model Phototrophic Biofilm Using an Integrated ‘Omics Approach

por Lindemann, Stephen R., Mobberley, Jennifer M., Cole, Jessica K., Markillie, L. M., Taylor, Ronald C., Huang, Eric, Chrisler, William B., Wiley, H. S., Lipton, Mary S., Nelson, William C., Fredrickson, James K., Romine, Margaret F.
Publicado 2017

Genomic encyclopedia of sugar utilization pathways in the Shewanella genus

por Rodionov, Dmitry A, Yang, Chen, Li, Xiaoqing, Rodionova, Irina A, Wang, Yanbing, Obraztsova, Anna Y, Zagnitko, Olga P, Overbeek, Ross, Romine, Margaret F, Reed, Samantha, Fredrickson, James K, Nealson, Kenneth H, Osterman, Andrei L
Publicado 2010

Indirect Interspecies Regulation: Transcriptional and Physiological Responses of a Cyanobacterium to Heterotrophic Partnership

por Bernstein, Hans C., McClure, Ryan S., Thiel, Vera, Sadler, Natalie C., Kim, Young-Mo, Chrisler, William B., Hill, Eric A., Bryant, Donald A., Romine, Margaret F., Jansson, Janet K., Fredrickson, Jim K., Beliaev, Alexander S.
Publicado 2017

Constraint-Based Model of Shewanella oneidensis MR-1 Metabolism: A Tool for Data Analysis and Hypothesis Generation

por Pinchuk, Grigoriy E., Hill, Eric A., Geydebrekht, Oleg V., De Ingeniis, Jessica, Zhang, Xiaolin, Osterman, Andrei, Scott, James H., Reed, Samantha B., Romine, Margaret F., Konopka, Allan E., Beliaev, Alexander S., Fredrickson, Jim K., Reed, Jennifer L.
Publicado 2010

Conserved synteny at the protein family level reveals genes underlying Shewanella species’ cold tolerance and predicts their novel phenotypes

por Karpinets, Tatiana V., Obraztsova, Anna Y., Wang, Yanbing, Schmoyer, Denise D., Kora, Guruprasad H., Park, Byung H., Serres, Margrethe H., Romine, Margaret F., Land, Miriam L., Kothe, Terence B., Fredrickson, Jim K., Nealson, Kenneth H., Uberbacher, Edward C.
Publicado 2009

MetFish: a Metabolomics Pipeline for Studying Microbial Communities in Chemically Extreme Environments

por Xu, Chengdong, Couvillion, Sneha P., Sontag, Ryan L., Isern, Nancy G., Maezato, Yukari, Lindemann, Stephen R., Roy Chowdhury, Taniya, Zhao, Rui, Morton, Beau R., Chu, Rosalie K., Moore, Ronald J., Jansson, Janet K., Bailey, Vanessa L., Mouser, Paula J., Romine, Margaret F., Fredrickson, James F., Metz, Thomas O.
Publicado 2021

c-Type Cytochrome-Dependent Formation of U(IV) Nanoparticles by Shewanella oneidensis

por Marshall, Matthew J, Beliaev, Alexander S, Dohnalkova, Alice C, Kennedy, David W, Shi, Liang, Wang, Zheming, Boyanov, Maxim I, Lai, Barry, Kemner, Kenneth M, McLean, Jeffrey S, Reed, Samantha B, Culley, David E, Bailey, Vanessa L, Simonson, Cody J, Saffarini, Daad A, Romine, Margaret F, Zachara, John M, Fredrickson, James K
Publicado 2006

Comparative genomic reconstruction of transcriptional networks controlling central metabolism in the Shewanella genus

por Rodionov, Dmitry A, Novichkov, Pavel S, Stavrovskaya, Elena D, Rodionova, Irina A, Li, Xiaoqing, Kazanov, Marat D, Ravcheev, Dmitry A, Gerasimova, Anna V, Kazakov, Alexey E, Kovaleva, Galina Yu, Permina, Elizabeth A, Laikova, Olga N, Overbeek, Ross, Romine, Margaret F, Fredrickson, James K, Arkin, Adam P, Dubchak, Inna, Osterman, Andrei L, Gelfand, Mikhail S
Publicado 2011