Polyribosomal RNA-Seq Reveals the Decreased Complexity and Diversity of the Arabidopsis Translatome

por Zhang, Xingtan, Rosen, Benjamin D., Tang, Haibao, Krishnakumar, Vivek, Town, Christopher D.
Publicado 2015

Investigation of ancestral alleles in the Bovinae subfamily

por Naji, Maulana M., Utsunomiya, Yuri T., Sölkner, Johann, Rosen, Benjamin D., Mészáros, Gábor
Publicado 2021

Assessing Bos taurus introgression in the UOA Bos indicus assembly

por Naji, Maulana M., Utsunomiya, Yuri T., Sölkner, Johann, Rosen, Benjamin D., Mészáros, Gábor
Publicado 2021

polishCLR: A Nextflow Workflow for Polishing PacBio CLR Genome Assemblies

por Chang, Jennifer, Stahlke, Amanda R, Chudalayandi, Sivanandan, Rosen, Benjamin D, Childers, Anna K, Severin, Andrew J
Publicado 2023

Morphometric Characterization of Local Goat Breeds in Two Agroecological Zones of Burkina Faso, West Africa

por Akounda, Badjibassa, Ouédraogo, Dominique, Soudré, Albert, Burger, Pamela A., Rosen, Benjamin D., Van Tassell, Curtis P., Sölkner, Johann
Publicado 2023

Favored single nucleotide variants identified using whole genome Re-sequencing of Austrian and Chinese cattle breeds

por Naji, Maulana M., Jiang, Yifan, Utsunomiya, Yuri T., Rosen, Benjamin D., Sölkner, Johann, Wang, Chuduan, Jiang, Li, Zhang, Qin, Zhang, Yi, Ding, Xiangdong, Mészáros, Gábor
Publicado 2022

AdaptMap: exploring goat diversity and adaptation

por Stella, Alessandra, Nicolazzi, Ezequiel Luis, Van Tassell, Curtis P., Rothschild, Max F., Colli, Licia, Rosen, Benjamin D., Sonstegard, Tad S., Crepaldi, Paola, Tosser-Klopp, Gwenola, Joost, Stephane
Publicado 2018

Comparative whole genome DNA methylation profiling of cattle sperm and somatic tissues reveals striking hypomethylated patterns in sperm

por Zhou, Yang, Connor, Erin E, Bickhart, Derek M, Li, Congjun, Baldwin, Ransom L, Schroeder, Steven G, Rosen, Benjamin D, Yang, Liguo, Van Tassell, Curtis P, Liu, George E
Publicado 2018

Variants Within Genes EDIL3 and ADGRB3 are Associated With Divergent Fecal Egg Counts in Katahdin Sheep at Weaning

por Becker, Gabrielle M., Burke, Joan M., Lewis, Ronald M., Miller, James E., Morgan, James L. M., Rosen, Benjamin D., Van Tassell, Curtis P., Notter, David R., Murdoch, Brenda M.
Publicado 2022

Whole genome structural analysis of Caribbean hair sheep reveals quantitative link to West African ancestry

por Spangler, Gordon L., Rosen, Benjamin D., Ilori, Moses Babatunde, Hanotte, Olivier, Kim, Eui-Soo, Sonstegard, Tad S., Burke, Joan M., Morgan, James L. M., Notter, David R., Van Tassell, Curtis P.
Publicado 2017

New insights into mammalian sex chromosome structure and evolution using high-quality sequences from bovine X and Y chromosomes

por Liu, Ruijie, Low, Wai Yee, Tearle, Rick, Koren, Sergey, Ghurye, Jay, Rhie, Arang, Phillippy, Adam M., Rosen, Benjamin D., Bickhart, Derek M., Smith, Timothy P. L., Hiendleder, Stefan, Williams, John L.
Publicado 2019

The Bovine Pangenome Consortium: democratizing production and accessibility of genome assemblies for global cattle breeds and other bovine species

por Smith, Timothy P. L., Bickhart, Derek M., Boichard, Didier, Chamberlain, Amanda J., Djikeng, Appolinaire, Jiang, Yu, Low, Wai Y., Pausch, Hubert, Demyda-Peyrás, Sebastian, Prendergast, James, Schnabel, Robert D., Rosen, Benjamin D.
Publicado 2023

An improved ovine reference genome assembly to facilitate in-depth functional annotation of the sheep genome

por Davenport, Kimberly M, Bickhart, Derek M, Worley, Kim, Murali, Shwetha C, Salavati, Mazdak, Clark, Emily L, Cockett, Noelle E, Heaton, Michael P, Smith, Timothy P L, Murdoch, Brenda M, Rosen, Benjamin D
Publicado 2022

Structural variant-based pangenome construction has low sensitivity to variability of haplotype-resolved bovine assemblies

por Leonard, Alexander S., Crysnanto, Danang, Fang, Zih-Hua, Heaton, Michael P., Vander Ley, Brian L., Herrera, Carolina, Bollwein, Heinrich, Bickhart, Derek M., Kuhn, Kristen L., Smith, Timothy P. L., Rosen, Benjamin D., Pausch, Hubert
Publicado 2022

Development and characterization of BAC-end sequence derived SSRs, and their incorporation into a new higher density genetic map for cultivated peanut (Arachis hypogaea L.)

por Wang, Hui, Penmetsa, R Varma, Yuan, Mei, Gong, Limin, Zhao, Yongli, Guo, Baozhu, Farmer, Andrew D, Rosen, Benjamin D, Gao, Jinliang, Isobe, Sachiko, Bertioli, David J, Varshney, Rajeev K, Cook, Douglas R, He, Guohao
Publicado 2012

Comparative analyses of sperm DNA methylomes among human, mouse and cattle provide insights into epigenomic evolution and complex traits

por Fang, Lingzhao, Zhou, Yang, Liu, Shuli, Jiang, Jicai, Bickhart, Derek M., Null, Daniel J., Li, Bingjie, Schroeder, Steven G., Rosen, Benjamin D., Cole, John B., Van Tassell, Curtis P., Ma, Li, Liu, George E.
Publicado 2019

Integrating Signals from Sperm Methylome Analysis and Genome-Wide Association Study for a Better Understanding of Male Fertility in Cattle

por Fang, Lingzhao, Zhou, Yang, Liu, Shuli, Jiang, Jicai, Bickhart, Derek M., Null, Daniel J., Li, Bingjie, Schroeder, Steven G., Rosen, Benjamin D., Cole, John B., Van Tassell, Curtis P., Ma, Li, Liu, George E.
Publicado 2019

Gaur genome reveals expansion of sperm odorant receptors in domesticated cattle

por Low, Wai Yee, Rosen, Benjamin D., Ren, Yan, Bickhart, Derek M., To, Thu-Hien, Martin, Fergal J., Billis, Konstantinos, Sonstegard, Tad S., Sullivan, Shawn T., Hiendleder, Stefan, Williams, John L., Heaton, Michael P., Smith, Timothy P. L.
Publicado 2022

Detection of copy number variants in African goats using whole genome sequence data

por Nandolo, Wilson, Mészáros, Gábor, Wurzinger, Maria, Banda, Liveness J., Gondwe, Timothy N., Mulindwa, Henry A., Nakimbugwe, Helen N., Clark, Emily L., Woodward-Greene, M. Jennifer, Liu, Mei, Liu, George E., Van Tassell, Curtis P., Rosen, Benjamin D., Sölkner, Johann
Publicado 2021

The Australasian dingo archetype: de novo chromosome-length genome assembly, DNA methylome, and cranial morphology

por Ballard, J William O, Field, Matt A, Edwards, Richard J, Wilson, Laura A B, Koungoulos, Loukas G, Rosen, Benjamin D, Chernoff, Barry, Dudchenko, Olga, Omer, Arina, Keilwagen, Jens, Skvortsova, Ksenia, Bogdanovic, Ozren, Chan, Eva, Zammit, Robert, Hayes, Vanessa, Aiden, Erez Lieberman
Publicado 2023