Teaching Microbiome Analysis: From Design to Computation Through Inquiry

por Rosen, Gail L., Hammrich, Penny
Publicado 2020

Combining gene prediction methods to improve metagenomic gene annotation

por Yok, Non G, Rosen, Gail L
Publicado 2011

NBC update: The addition of viral and fungal databases to the Naïve Bayes classification tool

por Rosen, Gail L, Lim, Tze Yee
Publicado 2012

Mapping Data to Deep Understanding: Making the Most of the Deluge of SARS-CoV-2 Genome Sequences

por Sokhansanj, Bahrad A., Rosen, Gail L.
Publicado 2022

Predicting COVID-19 disease severity from SARS-CoV-2 spike protein sequence by mixed effects machine learning

por Sokhansanj, Bahrad A., Rosen, Gail L.
Publicado 2022

Selecting age-related functional characteristics in the human gut microbiome

por Lan, Yemin, Kriete, Andres, Rosen, Gail L
Publicado 2013

MetaMutationalSigs: comparison of mutational signature refitting results made easy

por Pandey, Palash, Arora, Sanjeevani, Rosen, Gail L
Publicado 2022

Interpretable and Predictive Deep Neural Network Modeling of the SARS-CoV-2 Spike Protein Sequence to Predict COVID-19 Disease Severity

por Sokhansanj, Bahrad A., Zhao, Zhengqiao, Rosen, Gail L.
Publicado 2022

NBC: the Naïve Bayes Classification tool webserver for taxonomic classification of metagenomic reads

por Rosen, Gail L., Reichenberger, Erin R., Rosenfeld, Aaron M.
Publicado 2011

16S rRNA sequence embeddings: Meaningful numeric feature representations of nucleotide sequences that are convenient for downstream analyses

por Woloszynek, Stephen, Zhao, Zhengqiao, Chen, Jian, Rosen, Gail L.
Publicado 2019

Using the RDP Classifier to Predict Taxonomic Novelty and Reduce the Search Space for Finding Novel Organisms

por Lan, Yemin, Wang, Qiong, Cole, James R., Rosen, Gail L.
Publicado 2012

POGO-DB—a database of pairwise-comparisons of genomes and conserved orthologous genes

por Lan, Yemin, Morrison, J. Calvin, Hershberg, Ruth, Rosen, Gail L.
Publicado 2014

Fizzy: feature subset selection for metagenomics

por Ditzler, Gregory, Morrison, J. Calvin, Lan, Yemin, Rosen, Gail L.
Publicado 2015

Complet+: a computationally scalable method to improve completeness of large-scale protein sequence clustering

por Nguyen, Rachel, Sokhansanj, Bahrad A., Polikar, Robi, Rosen, Gail L.
Publicado 2023

Amino Acid k-mer Feature Extraction for Quantitative Antimicrobial Resistance (AMR) Prediction by Machine Learning and Model Interpretation for Biological Insights

por ValizadehAslani, Taha, Zhao, Zhengqiao, Sokhansanj, Bahrad A., Rosen, Gail L.
Publicado 2020

Genetic grouping of SARS-CoV-2 coronavirus sequences using informative subtype markers for pandemic spread visualization

por Zhao, Zhengqiao, Sokhansanj, Bahrad A., Malhotra, Charvi, Zheng, Kitty, Rosen, Gail L.
Publicado 2020

A Toolkit for ARB to Integrate Custom Databases and Externally Built Phylogenies

por Essinger, Steven D., Reichenberger, Erin, Morrison, Calvin, Blackwood, Christopher B., Rosen, Gail L.
Publicado 2015

Discovering the Unknown: Improving Detection of Novel Species and Genera from Short Reads

por Rosen, Gail L., Polikar, Robi, Caseiro, Diamantino A., Essinger, Steven D., Sokhansanj, Bahrad A.
Publicado 2011

Healthcare Shift Workers’ Temporal Habits for Eating, Sleeping, and Light Exposure: A Multi-Instrument Pilot Study

por Chen, Chiahui, ValizadehAslani, Taha, Rosen, Gail L., Anderson, Laura M., Jungquist, Carla R.
Publicado 2020

Learning, visualizing and exploring 16S rRNA structure using an attention-based deep neural network

por Zhao, Zhengqiao, Woloszynek, Stephen, Agbavor, Felix, Mell, Joshua Chang, Sokhansanj, Bahrad A., Rosen, Gail L.
Publicado 2021