Pervasive sequence patents cover the entire human genome

por Rosenfeld, Jeffrey A, Mason, Christopher E
Publicado 2013

Novel multi-nucleotide polymorphisms in the human genome characterized by whole genome and exome sequencing

por Rosenfeld, Jeffrey A., Malhotra, Anil K., Lencz, Todd
Publicado 2010

Limitations of the Human Reference Genome for Personalized Genomics

por Rosenfeld, Jeffrey A., Mason, Christopher E., Smith, Todd M.
Publicado 2012

Genome content analysis yields new insights into the relationship between the human malaria parasite Plasmodium falciparum and its anopheline vectors

por Oppenheim, Sara J., Rosenfeld, Jeffrey A., DeSalle, Rob
Publicado 2017

The impact of read length on quantification of differentially expressed genes and splice junction detection

por Chhangawala, Sagar, Rudy, Gabe, Mason, Christopher E., Rosenfeld, Jeffrey A.
Publicado 2015

Genomic and immunologic correlates of LAG-3 expression in cancer

por Panda, Anshuman, Rosenfeld, Jeffrey A., Singer, Eric A., Bhanot, Gyan, Ganesan, Shridar
Publicado 2020

Determination of enriched histone modifications in non-genic portions of the human genome

por Rosenfeld, Jeffrey A, Wang, Zhibin, Schones, Dustin E, Zhao, Keji, DeSalle, Rob, Zhang, Michael Q
Publicado 2009

Single-cell sperm transcriptomes and variants from fathers of children with and without autism spectrum disorder

por Tomoiaga, Delia, Aguiar-Pulido, Vanessa, Shrestha, Shristi, Feinstein, Paul, Levy, Shawn E., Mason, Christopher E., Rosenfeld, Jeffrey A.
Publicado 2020

TCF4 induces enzalutamide resistance via neuroendocrine differentiation in prostate cancer

por Lee, Geun Taek, Rosenfeld, Jeffrey A., Kim, Won Tae, Kwon, Young Suk, Palapattu, Ganesh, Mehra, Rohit, Kim, Wun-Jae, Kim, Isaac Yi
Publicado 2019

Whole Genome Sequencing and Assembly of the Asian Honey Bee Apis dorsata

por Oppenheim, Sara, Cao, Xiaolong, Rueppel, Olav, Krongdang, Sasiprapa, Phokasem, Patcharin, DeSalle, Rob, Goodwin, Sara, Xing, Jinchuan, Chantawannakul, Panuwan, Rosenfeld, Jeffrey A
Publicado 2019

Implications for health and disease in the genetic signature of the Ashkenazi Jewish population

por Guha, Saurav, Rosenfeld, Jeffrey A, Malhotra, Anil K, Lee, Annette T, Gregersen, Peter K, Kane, John M, Pe'er, Itsik, Darvasi, Ariel, Lencz, Todd
Publicado 2012

The mitogenome of the bed bug Cimex lectularius (Hemiptera: Cimicidae)

por Kolokotronis, Sergios-Orestis, Foox, Jonathan, Rosenfeld, Jeffrey A., Brugler, Mercer R., Reeves, Darryl, Benoit, Joshua B., Booth, Warren, Robison, Grant, Steffen, Michael, Sakas, Zoe, Palli, Subba R., Schal, Coby, Richards, Stephen, Narechania, Apurva, Baker, Richard H., Sorkin, Louis N., Amato, George, Mason, Christopher E., Siddall, Mark E., DeSalle, Rob
Publicado 2016

Genome assembly and geospatial phylogenomics of the bed bug Cimex lectularius

por Rosenfeld, Jeffrey A., Reeves, Darryl, Brugler, Mercer R., Narechania, Apurva, Simon, Sabrina, Durrett, Russell, Foox, Jonathan, Shianna, Kevin, Schatz, Michael C., Gandara, Jorge, Afshinnekoo, Ebrahim, Lam, Ernest T., Hastie, Alex R., Chan, Saki, Cao, Han, Saghbini, Michael, Kentsis, Alex, Planet, Paul J., Kholodovych, Vladyslav, Tessler, Michael, Baker, Richard, DeSalle, Rob, Sorkin, Louis N., Kolokotronis, Sergios-Orestis, Siddall, Mark E., Amato, George, Mason, Christopher E.
Publicado 2016

Benchmarking challenging small variants with linked and long reads

por Wagner, Justin, Olson, Nathan D., Harris, Lindsay, Khan, Ziad, Farek, Jesse, Mahmoud, Medhat, Stankovic, Ana, Kovacevic, Vladimir, Yoo, Byunggil, Miller, Neil, Rosenfeld, Jeffrey A., Ni, Bohan, Zarate, Samantha, Kirsche, Melanie, Aganezov, Sergey, Schatz, Michael C., Narzisi, Giuseppe, Byrska-Bishop, Marta, Clarke, Wayne, Evani, Uday S., Markello, Charles, Shafin, Kishwar, Zhou, Xin, Sidow, Arend, Bansal, Vikas, Ebert, Peter, Marschall, Tobias, Lansdorp, Peter, Hanlon, Vincent, Mattsson, Carl-Adam, Barrio, Alvaro Martinez, Fiddes, Ian T., Xiao, Chunlin, Fungtammasan, Arkarachai, Chin, Chen-Shan, Wenger, Aaron M., Rowell, William J., Sedlazeck, Fritz J., Carroll, Andrew, Salit, Marc, Zook, Justin M.
Publicado 2022

A robust benchmark for detection of germline large deletions and insertions

por Zook, Justin M., Hansen, Nancy F., Olson, Nathan D., Chapman, Lesley M., Mullikin, James C., Xiao, Chunlin, Sherry, Stephen, Koren, Sergey, Phillippy, Adam M., Boutros, Paul C., Sahraeian, Sayed Mohammad E., Huang, Vincent, Rouette, Alexandre, Alexander, Noah, Mason, Christopher E., Hajirasouliha, Iman, Ricketts, Camir, Lee, Joyce, Tearle, Rick, Fiddes, Ian T., Barrio, Alvaro Martinez, Wala, Jeremiah, Carroll, Andrew, Ghaffari, Noushin, Rodriguez, Oscar L., Bashir, Ali, Jackman, Shaun, Farrell, John J, Wenger, Aaron M, Alkan, Can, Soylev, Arda, Schatz, Michael C., Garg, Shilpa, Church, George, Marschall, Tobias, Chen, Ken, Fan, Xian, English, Adam C., Rosenfeld, Jeffrey A., Zhou, Weichen, Mills, Ryan E., Sage, Jay M., Davis, Jennifer R., Kaiser, Michael D., Oliver, John S., Catalano, Anthony P., Chaisson, Mark JP, Spies, Noah, Sedlazeck, Fritz J., Salit, Marc
Publicado 2020

Shotgun transcriptome, spatial omics, and isothermal profiling of SARS-CoV-2 infection reveals unique host responses, viral diversification, and drug interactions

por Butler, Daniel, Mozsary, Christopher, Meydan, Cem, Foox, Jonathan, Rosiene, Joel, Shaiber, Alon, Danko, David, Afshinnekoo, Ebrahim, MacKay, Matthew, Sedlazeck, Fritz J., Ivanov, Nikolay A., Sierra, Maria, Pohle, Diana, Zietz, Michael, Gisladottir, Undina, Ramlall, Vijendra, Sholle, Evan T., Schenck, Edward J., Westover, Craig D., Hassan, Ciaran, Ryon, Krista, Young, Benjamin, Bhattacharya, Chandrima, Ng, Dianna L., Granados, Andrea C., Santos, Yale A., Servellita, Venice, Federman, Scot, Ruggiero, Phyllis, Fungtammasan, Arkarachai, Chin, Chen-Shan, Pearson, Nathaniel M., Langhorst, Bradley W., Tanner, Nathan A., Kim, Youngmi, Reeves, Jason W., Hether, Tyler D., Warren, Sarah E., Bailey, Michael, Gawrys, Justyna, Meleshko, Dmitry, Xu, Dong, Couto-Rodriguez, Mara, Nagy-Szakal, Dorottya, Barrows, Joseph, Wells, Heather, O’Hara, Niamh B., Rosenfeld, Jeffrey A., Chen, Ying, Steel, Peter A. D., Shemesh, Amos J., Xiang, Jenny, Thierry-Mieg, Jean, Thierry-Mieg, Danielle, Iftner, Angelika, Bezdan, Daniela, Sanchez, Elizabeth, Campion, Thomas R., Sipley, John, Cong, Lin, Craney, Arryn, Velu, Priya, Melnick, Ari M., Shapira, Sagi, Hajirasouliha, Iman, Borczuk, Alain, Iftner, Thomas, Salvatore, Mirella, Loda, Massimo, Westblade, Lars F., Cushing, Melissa, Wu, Shixiu, Levy, Shawn, Chiu, Charles, Schwartz, Robert E., Tatonetti, Nicholas, Rennert, Hanna, Imielinski, Marcin, Mason, Christopher E.
Publicado 2021

The complete sequence of a human genome*

por Nurk, Sergey, Koren, Sergey, Rhie, Arang, Rautiainen, Mikko, Bzikadze, Andrey V., Mikheenko, Alla, Vollger, Mitchell R., Altemose, Nicolas, Uralsky, Lev, Gershman, Ariel, Aganezov, Sergey, Hoyt, Savannah J., Diekhans, Mark, Logsdon, Glennis A., Alonge, Michael, Antonarakis, Stylianos E., Borchers, Matthew, Bouffard, Gerard G., Brooks, Shelise Y., Caldas, Gina V., Chen, Nae-Chyun, Cheng, Haoyu, Chin, Chen-Shan, Chow, William, de Lima, Leonardo G., Dishuck, Philip C., Durbin, Richard, Dvorkina, Tatiana, Fiddes, Ian T., Formenti, Giulio, Fulton, Robert S., Fungtammasan, Arkarachai, Garrison, Erik, Grady, Patrick G.S., Graves-Lindsay, Tina A., Hall, Ira M., Hansen, Nancy F., Hartley, Gabrielle A., Haukness, Marina, Howe, Kerstin, Hunkapiller, Michael W., Jain, Chirag, Jain, Miten, Jarvis, Erich D., Kerpedjiev, Peter, Kirsche, Melanie, Kolmogorov, Mikhail, Korlach, Jonas, Kremitzki, Milinn, Li, Heng, Maduro, Valerie V., Marschall, Tobias, McCartney, Ann M., McDaniel, Jennifer, Miller, Danny E., Mullikin, James C., Myers, Eugene W., Olson, Nathan D., Paten, Benedict, Peluso, Paul, Pevzner, Pavel A., Porubsky, David, Potapova, Tamara, Rogaev, Evgeny I., Rosenfeld, Jeffrey A., Salzberg, Steven L., Schneider, Valerie A., Sedlazeck, Fritz J., Shafin, Kishwar, Shew, Colin J., Shumate, Alaina, Sims, Ying, Smit, Arian F. A., Soto, Daniela C., Sović, Ivan, Storer, Jessica M., Streets, Aaron, Sullivan, Beth A., Thibaud-Nissen, Françoise, Torrance, James, Wagner, Justin, Walenz, Brian P., Wenger, Aaron, Wood, Jonathan M. D., Xiao, Chunlin, Yan, Stephanie M., Young, Alice C., Zarate, Samantha, Surti, Urvashi, McCoy, Rajiv C., Dennis, Megan Y., Alexandrov, Ivan A., Gerton, Jennifer L., O’Neill, Rachel J., Timp, Winston, Zook, Justin M., Schatz, Michael C., Eichler, Evan E., Miga, Karen H., Phillippy, Adam M.
Publicado 2022