Recovery of Metagenome-Assembled Genomes from a Human Fecal Sample with Pacific Biosciences High-Fidelity Sequencing

por Plaza Oñate, Florian, Roume, Hugo, Almeida, Mathieu
Publicado 2022

Long inverted repeats around the chromosome replication terminus in the model strain Bacillus thuringiensis serovar israelensis BGSC 4Q7

por Bolotin, Alexander, Quinquis, Benoit, Roume, Hugo, Gohar, Michel, Lereclus, Didier, Sorokin, Alexei
Publicado 2020

A biomolecular isolation framework for eco-systems biology

por Roume, Hugo, EL Muller, Emilie, Cordes, Thekla, Renaut, Jenny, Hiller, Karsten, Wilmes, Paul
Publicado 2013

Enhanced Product Recovery from Glycerol Fermentation into 3-Carbon Compounds in a Bioelectrochemical System Combined with In Situ Extraction

por Roume, Hugo, Arends, Jan B. A., Ameril, Camar P., Patil, Sunil A., Rabaey, Korneel
Publicado 2016

A Clostridium Group IV Species Dominates and Suppresses a Mixed Culture Fermentation by Tolerance to Medium Chain Fatty Acids Products

por Andersen, Stephen J., De Groof, Vicky, Khor, Way Cern, Roume, Hugo, Props, Ruben, Coma, Marta, Rabaey, Korneel
Publicado 2017

Benchmarking second and third-generation sequencing platforms for microbial metagenomics

por Meslier, Victoria, Quinquis, Benoit, Da Silva, Kévin, Plaza Oñate, Florian, Pons, Nicolas, Roume, Hugo, Podar, Mircea, Almeida, Mathieu
Publicado 2022

Electrolytic extraction drives volatile fatty acid chain elongation through lactic acid and replaces chemical pH control in thin stillage fermentation

por Andersen, Stephen J., Candry, Pieter, Basadre, Thais, Khor, Way Cern, Roume, Hugo, Hernandez-Sanabria, Emma, Coma, Marta, Rabaey, Korneel
Publicado 2015

Systematic Design of 18S rRNA Gene Primers for Determining Eukaryotic Diversity in Microbial Consortia

por Hugerth, Luisa W., Muller, Emilie E. L., Hu, Yue O. O., Lebrun, Laura A. M., Roume, Hugo, Lundin, Daniel, Wilmes, Paul, Andersson, Anders F.
Publicado 2014

Long-term diosmectite use does not alter the gut microbiota in adults with chronic diarrhea

por Da Silva, Kévin, Guilly, Susie, Thirion, Florence, Le Chatelier, Emmanuelle, Pons, Nicolas, Roume, Hugo, Quinquis, Benoît, Ehrlich, Stanislav D., Bekkat, Nassima, Mathiex-Fortunet, Hélène, Sokol, Harry, Doré, Joël
Publicado 2022

Identification of rumen microbial biomarkers linked to methane emission in Holstein dairy cows

por Ramayo‐Caldas, Yuliaxis, Zingaretti, Laura, Popova, Milka, Estellé, Jordi, Bernard, Aurelien, Pons, Nicolas, Bellot, Pau, Mach, Núria, Rau, Andrea, Roume, Hugo, Perez‐Enciso, Miguel, Faverdin, Philippe, Edouard, Nadège, Ehrlich, Dusko, Morgavi, Diego P., Renand, Gilles
Publicado 2019

Mediterranean diet intervention in overweight and obese subjects lowers plasma cholesterol and causes changes in the gut microbiome and metabolome independently of energy intake

por Meslier, Victoria, Laiola, Manolo, Roager, Henrik Munch, De Filippis, Francesca, Roume, Hugo, Quinquis, Benoit, Giacco, Rosalba, Mennella, Ilario, Ferracane, Rosalia, Pons, Nicolas, Pasolli, Edoardo, Rivellese, Angela, Dragsted, Lars Ove, Vitaglione, Paola, Ehrlich, Stanislav Dusko, Ercolini, Danilo
Publicado 2020

Nitrogen cycle microorganisms can be reactivated after Space exposure

por Lindeboom, Ralph E. F., Ilgrande, Chiara, Carvajal-Arroyo, José M., Coninx, Ilse, Van Hoey, Olivier, Roume, Hugo, Morozova, Julia, Udert, Kai M., Sas, Benedikt, Paille, Christel, Lasseur, Christophe, Ilyin, Vyacheslav, Clauwaert, Peter, Leys, Natalie, Vlaeminck, Siegfried E.
Publicado 2018

Comparative integrated omics: identification of key functionalities in microbial community-wide metabolic networks

por Roume, Hugo, Heintz-Buschart, Anna, Muller, Emilie E L, May, Patrick, Satagopam, Venkata P, Laczny, Cédric C, Narayanasamy, Shaman, Lebrun, Laura A, Hoopmann, Michael R, Schupp, James M, Gillece, John D, Hicks, Nathan D, Engelthaler, David M, Sauter, Thomas, Keim, Paul S, Moritz, Robert L, Wilmes, Paul
Publicado 2015

Increasing the diversity of dietary fibers in a daily-consumed bread modifies gut microbiota and metabolic profile in subjects at cardiometabolic risk

por Ranaivo, Harimalala, Thirion, Florence, Béra-Maillet, Christel, Guilly, Susie, Simon, Chantal, Sothier, Monique, Van Den Berghe, Laurie, Feugier-Favier, Nathalie, Lambert-Porcheron, Stéphanie, Dussous, Isabelle, Roger, Loïc, Roume, Hugo, Galleron, Nathalie, Pons, Nicolas, Le Chatelier, Emmanuelle, Ehrlich, Stanislav Dusko, Laville, Martine, Doré, Joël, Nazare, Julie-Anne
Publicado 2022

The gut microbiota contributes to the pathogenesis of anorexia nervosa in humans and mice

por Fan, Yong, Støving, René Klinkby, Berreira Ibraim, Samar, Hyötyläinen, Tuulia, Thirion, Florence, Arora, Tulika, Lyu, Liwei, Stankevic, Evelina, Hansen, Tue Haldor, Déchelotte, Pierre, Sinioja, Tim, Ragnarsdottir, Oddny, Pons, Nicolas, Galleron, Nathalie, Quinquis, Benoît, Levenez, Florence, Roume, Hugo, Falony, Gwen, Vieira-Silva, Sara, Raes, Jeroen, Clausen, Loa, Telléus, Gry Kjaersdam, Bäckhed, Fredrik, Oresic, Matej, Ehrlich, S. Dusko, Pedersen, Oluf
Publicado 2023

Community-integrated omics links dominance of a microbial generalist to fine-tuned resource usage

por Muller, Emilie E. L., Pinel, Nicolás, Laczny, Cédric C., Hoopmann, Michael R., Narayanasamy, Shaman, Lebrun, Laura A., Roume, Hugo, Lin, Jake, May, Patrick, Hicks, Nathan D., Heintz-Buschart, Anna, Wampach, Linda, Liu, Cindy M., Price, Lance B., Gillece, John D., Guignard, Cédric, Schupp, James M., Vlassis, Nikos, Baliga, Nitin S., Moritz, Robert L., Keim, Paul S., Wilmes, Paul
Publicado 2014

Integration of time-series meta-omics data reveals how microbial ecosystems respond to disturbance

por Herold, Malte, Martínez Arbas, Susana, Narayanasamy, Shaman, Sheik, Abdul R., Kleine-Borgmann, Luise A. K., Lebrun, Laura A., Kunath, Benoît J., Roume, Hugo, Bessarab, Irina, Williams, Rohan B. H., Gillece, John D., Schupp, James M., Keim, Paul S., Jäger, Christian, Hoopmann, Michael R., Moritz, Robert L., Ye, Yuzhen, Li, Sujun, Tang, Haixu, Heintz-Buschart, Anna, May, Patrick, Muller, Emilie E. L., Laczny, Cedric C., Wilmes, Paul
Publicado 2020

Microbiome definition re-visited: old concepts and new challenges

por Berg, Gabriele, Rybakova, Daria, Fischer, Doreen, Cernava, Tomislav, Vergès, Marie-Christine Champomier, Charles, Trevor, Chen, Xiaoyulong, Cocolin, Luca, Eversole, Kellye, Corral, Gema Herrero, Kazou, Maria, Kinkel, Linda, Lange, Lene, Lima, Nelson, Loy, Alexander, Macklin, James A., Maguin, Emmanuelle, Mauchline, Tim, McClure, Ryan, Mitter, Birgit, Ryan, Matthew, Sarand, Inga, Smidt, Hauke, Schelkle, Bettina, Roume, Hugo, Kiran, G. Seghal, Selvin, Joseph, Souza, Rafael Soares Correa de, van Overbeek, Leo, Singh, Brajesh K., Wagner, Michael, Walsh, Aaron, Sessitsch, Angela, Schloter, Michael
Publicado 2020

Correction to: Microbiome definition re-visited: old concepts and new challenges

por Berg, Gabriele, Rybakova, Daria, Fischer, Doreen, Cernava, Tomislav, Vergès, Marie-Christine Champomier, Charles, Trevor, Chen, Xiaoyulong, Cocolin, Luca, Eversole, Kellye, Corral, Gema Herrero, Kazou, Maria, Kinkel, Linda, Lange, Lene, Lima, Nelson, Loy, Alexander, Macklin, James A., Maguin, Emmanuelle, Mauchline, Tim, McClure, Ryan, Mitter, Birgit, Ryan, Matthew, Sarand, Inga, Smidt, Hauke, Schelkle, Bettina, Roume, Hugo, Kiran, G. Seghal, Selvin, Joseph, de Souza, Rafael Soares Correa, van Overbeek, Leo, Singh, Brajesh K., Wagner, Michael, Walsh, Aaron, Sessitsch, Angela, Schloter, Michael
Publicado 2020

Imidazole propionate is increased in diabetes and associated with dietary patterns and altered microbial ecology

por Molinaro, Antonio, Bel Lassen, Pierre, Henricsson, Marcus, Wu, Hao, Adriouch, Solia, Belda, Eugeni, Chakaroun, Rima, Nielsen, Trine, Bergh, Per-Olof, Rouault, Christine, André, Sébastien, Marquet, Florian, Andreelli, Fabrizio, Salem, Joe-Elie, Assmann, Karen, Bastard, Jean-Philippe, Forslund, Sofia, Le Chatelier, Emmanuelle, Falony, Gwen, Pons, Nicolas, Prifti, Edi, Quinquis, Benoit, Roume, Hugo, Vieira-Silva, Sara, Hansen, Tue H., Pedersen, Helle Krogh, Lewinter, Christian, Sønderskov, Nadja B., Køber, Lars, Vestergaard, Henrik, Hansen, Torben, Zucker, Jean-Daniel, Galan, Pilar, Dumas, Marc-Emmanuel, Raes, Jeroen, Oppert, Jean-Michel, Letunic, Ivica, Nielsen, Jens, Bork, Peer, Ehrlich, S. Dusko, Stumvoll, Michael, Pedersen, Oluf, Aron-Wisneswky, Judith, Clément, Karine, Bäckhed, Fredrik
Publicado 2020