Tiling array data analysis: a multiscale approach using wavelets

por Karpikov, Alexander, Rozowsky, Joel, Gerstein, Mark
Publicado 2011

MUSIC: identification of enriched regions in ChIP-Seq experiments using a mappability-corrected multiscale signal processing framework

por Harmanci, Arif, Rozowsky, Joel, Gerstein, Mark
Publicado 2014

Toward a universal microarray: prediction of gene expression through nearest-neighbor probe sequence identification

por Royce, Thomas E., Rozowsky, Joel S., Gerstein, Mark B.
Publicado 2007

An approach to comparing tiling array and high throughput sequencing technologies for genomic transcript mapping

por Sasidharan, Rajkumar, Agarwal, Ashish, Rozowsky, Joel, Gerstein, Mark
Publicado 2009

An approach to compare genome tiling microarray and MPSS sequencing data for transcript mapping

por Sasidharan, Rajkumar, Agarwal, Ashish, Rozowsky, Joel, Gerstein, Mark
Publicado 2009

Structuring supplemental materials in support of reproducibility

por Greenbaum, Dov, Rozowsky, Joel, Stodden, Victoria, Gerstein, Mark
Publicado 2017

Modeling ChIP Sequencing In Silico with Applications

por Zhang, Zhengdong D., Rozowsky, Joel, Snyder, Michael, Chang, Joseph, Gerstein, Mark
Publicado 2008

OrthoClust: an orthology-based network framework for clustering data across multiple species

por Yan, Koon-Kiu, Wang, Daifeng, Rozowsky, Joel, Zheng, Henry, Cheng, Chao, Gerstein, Mark
Publicado 2014

Tilescope: online analysis pipeline for high-density tiling microarray data

por Zhang, Zhengdong D, Rozowsky, Joel, Lam, Hugo YK, Du, Jiang, Snyder, Michael, Gerstein, Mark
Publicado 2007

Mismatch oligonucleotides in human and yeast: guidelines for probe design on tiling microarrays

por Seringhaus, Michael, Rozowsky, Joel, Royce, Thomas, Nagalakshmi, Ugrappa, Jee, Justin, Snyder, Michael, Gerstein, Mark
Publicado 2008

RSEQtools: a modular framework to analyze RNA-Seq data using compact, anonymized data summaries

por Habegger, Lukas, Sboner, Andrea, Gianoulis, Tara A., Rozowsky, Joel, Agarwal, Ashish, Snyder, Michael, Gerstein, Mark
Publicado 2011

A statistical framework for modeling gene expression using chromatin features and application to modENCODE datasets

por Cheng, Chao, Yan, Koon-Kiu, Yip, Kevin Y, Rozowsky, Joel, Alexander, Roger, Shou, Chong, Gerstein, Mark
Publicado 2011

Loregic: A Method to Characterize the Cooperative Logic of Regulatory Factors

por Wang, Daifeng, Yan, Koon-Kiu, Sisu, Cristina, Cheng, Chao, Rozowsky, Joel, Meyerson, William, Gerstein, Mark B.
Publicado 2015

Efficient yeast ChIP-Seq using multiplex short-read DNA sequencing

por Lefrançois, Philippe, Euskirchen, Ghia M, Auerbach, Raymond K, Rozowsky, Joel, Gibson, Theodore, Yellman, Christopher M, Gerstein, Mark, Snyder, Michael
Publicado 2009

Systematic analysis of transcribed loci in ENCODE regions using RACE sequencing reveals extensive transcription in the human genome

por Wu, Jia Qian, Du, Jiang, Rozowsky, Joel, Zhang, Zhengdong, Urban, Alexander E, Euskirchen, Ghia, Weissman, Sherman, Gerstein, Mark, Snyder, Michael
Publicado 2008

A uniform survey of allele-specific binding and expression over 1000-Genomes-Project individuals

por Chen, Jieming, Rozowsky, Joel, Galeev, Timur R., Harmanci, Arif, Kitchen, Robert, Bedford, Jason, Abyzov, Alexej, Kong, Yong, Regan, Lynne, Gerstein, Mark
Publicado 2016

Diverse Roles and Interactions of the SWI/SNF Chromatin Remodeling Complex Revealed Using Global Approaches

por Euskirchen, Ghia M., Auerbach, Raymond K., Davidov, Eugene, Gianoulis, Tara A., Zhong, Guoneng, Rozowsky, Joel, Bhardwaj, Nitin, Gerstein, Mark B., Snyder, Michael
Publicado 2011

Stroke and Circulating Extracellular RNAs

por Mick, Eric, Shah, Ravi, Tanriverdi, Kahraman, Murthy, Venkatesh, Gerstein, Mark, Rozowsky, Joel, Kitchen, Robert, Larson, Martin G., Levy, Daniel, Freedman, Jane E.
Publicado 2017

ACT: aggregation and correlation toolbox for analyses of genome tracks

por Jee, Justin, Rozowsky, Joel, Yip, Kevin Y., Lochovsky, Lucas, Bjornson, Robert, Zhong, Guoneng, Zhang, Zhengdong, Fu, Yutao, Wang, Jie, Weng, Zhiping, Gerstein, Mark
Publicado 2011

Comparison and calibration of transcriptome data from RNA-Seq and tiling arrays

por Agarwal, Ashish, Koppstein, David, Rozowsky, Joel, Sboner, Andrea, Habegger, Lukas, Hillier, LaDeana W, Sasidharan, Rajkumar, Reinke, Valerie, Waterston, Robert H, Gerstein, Mark
Publicado 2010