Investigation of the Phageome and Prophages in French Cider, a Fermented Beverage

por Ledormand, Pierre, Desmasures, Nathalie, Midoux, Cédric, Rué, Olivier, Dalmasso, Marion
Publicado 2022

A Yarrowia lipolytica Strain Engineered for Pyomelanin Production

por Larroude, Macarena, Onésime, Djamila, Rué, Olivier, Nicaud, Jean-Marc, Rossignol, Tristan
Publicado 2021

Detection of an amplification bias associated to Leuconostocaceae family with a universal primer routinely used for monitoring microbial community structures within food products

por Poirier, Simon, Rué, Olivier, Coeuret, Gwendoline, Champomier-Vergès, Marie-Christine, Loux, Valentin, Chaillou, Stéphane
Publicado 2018

Lactococcus lactis Diversity Revealed by Targeted Amplicon Sequencing of purR Gene, Metabolic Comparisons and Antimicrobial Properties in an Undefined Mixed Starter Culture Used fo...

por Saltaji, Sabrina, Rué, Olivier, Sopena, Valérie, Sablé, Sophie, Tambadou, Fatoumata, Didelot, Sandrine, Chevrot, Romain
Publicado 2020

Characterization of an extensive rainbow trout miRNA transcriptome by next generation sequencing

por Juanchich, Amelie, Bardou, Philippe, Rué, Olivier, Gabillard, Jean-Charles, Gaspin, Christine, Bobe, Julien, Guiguen, Yann
Publicado 2016

Virulent Phages Isolated from a Smear-Ripened Cheese Are Also Detected in Reservoirs of the Cheese Factory

por Paillet, Thomas, Lossouarn, Julien, Figueroa, Clarisse, Midoux, Cédric, Rué, Olivier, Petit, Marie-Agnès, Dugat-Bony, Eric
Publicado 2022

Deciphering intra-species bacterial diversity of meat and seafood spoilage microbiota using gyrB amplicon sequencing: A comparative analysis with 16S rDNA V3-V4 amplicon sequencing

por Poirier, Simon, Rué, Olivier, Peguilhan, Raphaëlle, Coeuret, Gwendoline, Zagorec, Monique, Champomier-Vergès, Marie-Christine, Loux, Valentin, Chaillou, Stéphane
Publicado 2018

Mining the equine gut metagenome: poorly-characterized taxa associated with cardiovascular fitness in endurance athletes

por Mach, Núria, Midoux, Cédric, Leclercq, Sébastien, Pennarun, Samuel, Le Moyec, Laurence, Rué, Olivier, Robert, Céline, Sallé, Guillaume, Barrey, Eric
Publicado 2022

Taxon Appearance From Extraction and Amplification Steps Demonstrates the Value of Multiple Controls in Tick Microbiota Analysis

por Lejal, Emilie, Estrada-Peña, Agustín, Marsot, Maud, Cosson, Jean-François, Rué, Olivier, Mariadassou, Mahendra, Midoux, Cédric, Vayssier-Taussat, Muriel, Pollet, Thomas
Publicado 2020

Integration of Multiomic Data to Characterize the Influence of Milk Fat Composition on Cantal-Type Cheese Microbiota

por Frétin, Marie, Gérard, Amaury, Ferlay, Anne, Martin, Bruno, Buchin, Solange, Theil, Sébastien, Rifa, Etienne, Loux, Valentin, Rué, Olivier, Chassard, Christophe, Delbès, Céline
Publicado 2022

The ileal fungal microbiota is altered in Crohn's disease and is associated with the disease course

por Olaisen, Maya, Richard, Mathias L., Beisvåg, Vidar, Granlund, Atle van Beelen, Røyset, Elin S., Rué, Olivier, Martinsen, Tom Christian, Sandvik, Arne Kristian, Sokol, Harry, Fossmark, Reidar
Publicado 2022

Does Physical Inactivity Induce Significant Changes in Human Gut Microbiota? New Answers Using the Dry Immersion Hypoactivity Model

por Jollet, Maxence, Nay, Kevin, Chopard, Angèle, Bareille, Marie-Pierre, Beck, Arnaud, Ollendorff, Vincent, Vernus, Barbara, Bonnieu, Anne, Mariadassou, Mahendra, Rué, Olivier, Derbré, Frédéric, Goustard, Bénédicte, Koechlin-Ramonatxo, Christelle
Publicado 2021

Nitric Oxide Impacts Human Gut Microbiota Diversity and Functionalities

por Leclerc, Marion, Bedu-Ferrari, Cassandre, Etienne-Mesmin, Lucie, Mariadassou, Mahendra, Lebreuilly, Lucie, Tran, Seav-Ly, Brazeau, Laurence, Mayeur, Camille, Delmas, Julien, Rué, Olivier, Denis, Sylvain, Blanquet-Diot, Stéphanie, Ramarao, Nalini
Publicado 2021

Holistic integration of omics data reveals the drivers that shape the ecology of microbial meat spoilage scenarios

por Poirier, Simon, Coeuret, Gwendoline, Champomier-Vergès, Marie-Christine, Desmonts, Marie-Hélène, Werner, Dalal, Feurer, Carole, Frémaux, Bastien, Guillou, Sandrine, Luong, Ngoc-Du Martin, Rué, Olivier, Loux, Valentin, Zagorec, Monique, Chaillou, Stéphane
Publicado 2023

Draft Anaplasma phagocytophilum Genome Sequences from Five Cows, Two Horses, and One Roe Deer Collected in Europe

por Dugat, Thibaud, Rossignol, Marie-Noëlle, Rué, Olivier, Loux, Valentin, Marthey, Sylvain, Moroldo, Marco, Silaghi, Cornelia, Höper, Dirk, Fröhlich, Julia, Pfeffer, Martin, Zweygarth, Erich, Lagrée, Anne-Claire, Boulouis, Henri-Jean, Haddad, Nadia
Publicado 2016

A Probiotic Mixture Induces Anxiolytic- and Antidepressive-Like Effects in Fischer and Maternally Deprived Long Evans Rats

por Daugé, Valérie, Philippe, Catherine, Mariadassou, Mahendra, Rué, Olivier, Martin, Jean-Charles, Rossignol, Marie-Noelle, Dourmap, Nathalie, Svilar, Ljubica, Tourniaire, Franck, Monnoye, Magali, Jardet, Deborah, Bangratz, Marie, Holowacz, Sophie, Rabot, Sylvie, Naudon, Laurent
Publicado 2020

Microbiota members from body sites of dairy cows are largely shared within individual hosts throughout lactation but sharing is limited in the herd

por Mariadassou, Mahendra, Nouvel, Laurent X., Constant, Fabienne, Morgavi, Diego P., Rault, Lucie, Barbey, Sarah, Helloin, Emmanuelle, Rué, Olivier, Schbath, Sophie, Launay, Frederic, Sandra, Olivier, Lefebvre, Rachel, Le Loir, Yves, Germon, Pierre, Citti, Christine, Even, Sergine
Publicado 2023

The Rhinobiome of Exacerbated Wheezers and Asthmatics: Insights From a German Pediatric Exacerbation Network

por Aydin, Malik, Weisser, Cornelius, Rué, Olivier, Mariadassou, Mahendra, Maaß, Sandra, Behrendt, Ann-Kathrin, Jaszczyszyn, Yan, Heilker, Tatje, Spaeth, Maximilian, Vogel, Silvia, Lutz, Sören, Ahmad-Nejad, Parviz, Graf, Viktoria, Bellm, Aliyah, Weisser, Christoph, Naumova, Ella A., Arnold, Wolfgang H., Ehrhardt, Anja, Meyer-Bahlburg, Almut, Becher, Dörte, Postberg, Jan, Ghebremedhin, Beniam, Wirth, Stefan
Publicado 2021

Large-scale multivariate dataset on the characterization of microbiota diversity, microbial growth dynamics, metabolic spoilage volatilome and sensorial profiles of two industriall...

por Poirier, Simon, Luong, Ngoc-Du Martin, Anthoine, Valérie, Guillou, Sandrine, Membré, Jeanne-Marie, Moriceau, Nicolas, Rezé, Sandrine, Zagorec, Monique, Feurer, Carole, Frémaux, Bastien, Jeuge, Sabine, Robieu, Emeline, Champomier-Vergès, Marie, Coeuret, Gwendoline, Cauchie, Emilie, Daube, Georges, Korsak, Nicolas, Coroller, Louis, Desriac, Noémie, Desmonts, Marie-Hélène, Gohier, Rodérick, Werner, Dalal, Loux, Valentin, Rué, Olivier, Dohollou, Marie-Hélène, Defosse, Tatiana, Chaillou, Stéphane
Publicado 2020

Oak genome reveals facets of long lifespan

por Plomion, Christophe, Aury, Jean-Marc, Amselem, Joëlle, Leroy, Thibault, Murat, Florent, Duplessis, Sébastien, Faye, Sébastien, Francillonne, Nicolas, Labadie, Karine, Le Provost, Grégoire, Lesur, Isabelle, Bartholomé, Jérôme, Faivre-Rampant, Patricia, Kohler, Annegret, Leplé, Jean-Charles, Chantret, Nathalie, Chen, Jun, Diévart, Anne, Alaeitabar, Tina, Barbe, Valérie, Belser, Caroline, Bergès, Hélène, Bodénès, Catherine, Bogeat-Triboulot, Marie-Béatrice, Bouffaud, Marie-Lara, Brachi, Benjamin, Chancerel, Emilie, Cohen, David, Couloux, Arnaud, Da Silva, Corinne, Dossat, Carole, Ehrenmann, François, Gaspin, Christine, Grima-Pettenati, Jacqueline, Guichoux, Erwan, Hecker, Arnaud, Herrmann, Sylvie, Hugueney, Philippe, Hummel, Irène, Klopp, Christophe, Lalanne, Céline, Lascoux, Martin, Lasserre, Eric, Lemainque, Arnaud, Desprez-Loustau, Marie-Laure, Luyten, Isabelle, Madoui, Mohammed-Amin, Mangenot, Sophie, Marchal, Clémence, Maumus, Florian, Mercier, Jonathan, Michotey, Célia, Panaud, Olivier, Picault, Nathalie, Rouhier, Nicolas, Rué, Olivier, Rustenholz, Camille, Salin, Franck, Soler, Marçal, Tarkka, Mika, Velt, Amandine, Zanne, Amy E., Martin, Francis, Wincker, Patrick, Quesneville, Hadi, Kremer, Antoine, Salse, Jérôme
Publicado 2018