siRNA-mediated off-target gene silencing triggered by a 7 nt complementation

por Lin, Xiaoyu, Ruan, Xiaoan, Anderson, Mark G., McDowell, Jeffrey A., Kroeger, Paul E., Fesik, Stephen W., Shen, Yu
Publicado 2005

Chromatin Interaction Analysis with Paired-End Tag Sequencing (ChIA-PET) for Mapping Chromatin Interactions and Understanding Transcription Regulation

por Goh, Yufen, Fullwood, Melissa J., Poh, Huay Mei, Peh, Su Qin, Ong, Chin Thing, Zhang, Jingyao, Ruan, Xiaoan, Ruan, Yijun
Publicado 2012

Specific gene-regulation networks during the pre-implantation development of the pig embryo as revealed by deep sequencing

por Cao, Suying, Han, Jianyong, Wu, Jun, Li, Qiuyan, Liu, Shichao, Zhang, Wei, Pei, Yangli, Ruan, Xiaoan, Liu, Zhonghua, Wang, Xumin, Lim, Bing, Li, Ning
Publicado 2014

Xenopus tropicalis Genome Re-Scaffolding and Re-Annotation Reach the Resolution Required for In Vivo ChIA-PET Analysis

por Buisine, Nicolas, Ruan, Xiaoan, Bilesimo, Patrice, Grimaldi, Alexis, Alfama, Gladys, Ariyaratne, Pramila, Mulawadi, Fabianus, Chen, Jieqi, Sung, Wing-Kin, Liu, Edison T., Demeneix, Barbara A., Ruan, Yijun, Sachs, Laurent M.
Publicado 2015

Chromatin topology reorganization and transcription repression by PML-RARα in acute promyeloid leukemia

por Wang, Ping, Tang, Zhonghui, Lee, Byoungkoo, Zhu, Jacqueline Jufen, Cai, Liuyang, Szalaj, Przemyslaw, Tian, Simon Zhongyuan, Zheng, Meizhen, Plewczynski, Dariusz, Ruan, Xiaoan, Liu, Edison T., Wei, Chia-Lin, Ruan, Yijun
Publicado 2020

Sequencing of E. coli strain UTI89 on multiple sequencing platforms

por Fenlon, Shannon N., Chee, Yuemin Celina, Chee, Jacqueline Lai Yuen, Choy, Yeen Hui, Khng, Alexis Jiaying, Liow, Lu Ting, Mehershahi, Kurosh S., Ruan, Xiaoan, Turner, Stephen W., Yao, Fei, Chen, Swaine L.
Publicado 2020

Large-Scale Functional Organization of Long-Range Chromatin Interaction Networks

por Sandhu, Kuljeet Singh, Li, Guoliang, Poh, Huay Mei, Quek, Yu Ling Kelly, Sia, Yee Yen, Peh, Su Qin, Mulawadi, Fabianus Hendriyan, Lim, Joanne, Sikic, Mile, Menghi, Francesca, Thalamuthu, Anbupalam, Sung, Wing Kin, Ruan, Xiaoan, Fullwood, Melissa Jane, Liu, Edison, Csermely, Peter, Ruan, Yijun
Publicado 2012

The genome sequence of Sea-Island cotton (Gossypium barbadense) provides insights into the allopolyploidization and development of superior spinnable fibres

por Yuan, Daojun, Tang, Zhonghui, Wang, Maojun, Gao, Wenhui, Tu, Lili, Jin, Xin, Chen, Lingling, He, Yonghui, Zhang, Lin, Zhu, Longfu, Li, Yang, Liang, Qiqi, Lin, Zhongxu, Yang, Xiyan, Liu, Nian, Jin, Shuangxia, Lei, Yang, Ding, Yuanhao, Li, Guoliang, Ruan, Xiaoan, Ruan, Yijun, Zhang, Xianlong
Publicado 2015

Coherence analysis discriminates between retroviral integration patterns in CD34(+) cells transduced under differing clinical trial conditions

por Hallwirth, Claus V, Garg, Gagan, Peters, Timothy J, Kramer, Belinda A, Malani, Nirav V, Hyman, Jessica, Ruan, Xiaoan, Ginn, Samantha L, Hetherington, Nicola A, Veeravalli, Lavanya, Shahab, Atif, Ranganathan, Shoba, Wei, Chia-Lin, Liddle, Christopher, Thrasher, Adrian J, Bushman, Frederic D, Buckley, Michael J, Alexander, Ian E
Publicado 2015

The Genome of C57BL/6J “Eve”, the Mother of the Laboratory Mouse Genome Reference Strain

por Sarsani, Vishal Kumar, Raghupathy, Narayanan, Fiddes, Ian T., Armstrong, Joel, Thibaud-Nissen, Francoise, Zinder, Oraya, Bolisetty, Mohan, Howe, Kerstin, Hinerfeld, Doug, Ruan, Xiaoan, Rowe, Lucy, Barter, Mary, Ananda, Guruprasad, Paten, Benedict, Weinstock, George M., Churchill, Gary A., Wiles, Michael V., Schneider, Valerie A., Srivastava, Anuj, Reinholdt, Laura G.
Publicado 2019

An AR-ERG transcriptional signature defined by long-range chromatin interactomes in prostate cancer cells

por Zhang, Zhizhuo, Chng, Kern Rei, Lingadahalli, Shreyas, Chen, Zikai, Liu, Mei Hui, Do, Huy Hoang, Cai, Shaojiang, Rinaldi, Nicola, Poh, Huay Mei, Li, Guoliang, Sung, Ying Ying, Heng, Charlie L., Core, Leighton J., Tan, Si Kee, Ruan, Xiaoan, Lis, John T., Kellis, Manolis, Ruan, Yijun, Sung, Wing-Kin, Cheung, Edwin
Publicado 2019

Cross-enhancement of ANGPTL4 transcription by HIF1 alpha and PPAR beta/delta is the result of the conformational proximity of two response elements

por Inoue, Tsuyoshi, Kohro, Takahide, Tanaka, Toshiya, Kanki, Yasuharu, Li, Guoliang, Poh, Huay-Mei, Mimura, Imari, Kobayashi, Mika, Taguchi, Akashi, Maejima, Takashi, Suehiro, Jun-ichi, Sugiyama, Akira, Kaneki, Kiyomi, Aruga, Hirofumi, Dong, Shoulian, Stevens, Junko F, Yamamoto, Shogo, Tsutsumi, Shuichi, Fujita, Toshiro, Ruan, Xiaoan, Aburatani, Hiroyuki, Nangaku, Masaomi, Ruan, Yijun, Kodama, Tatsuhiko, Wada, Youichiro
Publicado 2014

Systems consequences of amplicon formation in human breast cancer

por Inaki, Koichiro, Menghi, Francesca, Woo, Xing Yi, Wagner, Joel P., Jacques, Pierre-Étienne, Lee, Yi Fang, Shreckengast, Phung Trang, Soon, Wendy WeiJia, Malhotra, Ankit, Teo, Audrey S.M., Hillmer, Axel M., Khng, Alexis Jiaying, Ruan, Xiaoan, Ong, Swee Hoe, Bertrand, Denis, Nagarajan, Niranjan, Karuturi, R. Krishna Murthy, Hidalgo Miranda, Alfredo, Liu, Edison T.
Publicado 2014

The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression

por Derrien, Thomas, Johnson, Rory, Bussotti, Giovanni, Tanzer, Andrea, Djebali, Sarah, Tilgner, Hagen, Guernec, Gregory, Martin, David, Merkel, Angelika, Knowles, David G., Lagarde, Julien, Veeravalli, Lavanya, Ruan, Xiaoan, Ruan, Yijun, Lassmann, Timo, Carninci, Piero, Brown, James B., Lipovich, Leonard, Gonzalez, Jose M., Thomas, Mark, Davis, Carrie A., Shiekhattar, Ramin, Gingeras, Thomas R., Hubbard, Tim J., Notredame, Cedric, Harrow, Jennifer, Guigó, Roderic
Publicado 2012

Long Span DNA Paired-End-Tag (DNA-PET) Sequencing Strategy for the Interrogation of Genomic Structural Mutations and Fusion-Point-Guided Reconstruction of Amplicons

por Yao, Fei, Ariyaratne, Pramila N., Hillmer, Axel M., Lee, Wah Heng, Li, Guoliang, Teo, Audrey S. M., Woo, Xing Yi, Zhang, Zhenshui, Chen, Jieqi P., Poh, Wan Ting, Zawack, Kelson F. B., Chan, Chee Seng, Leong, See Ting, Neo, Say Chuan, Choi, Poh Sum D., Gao, Song, Nagarajan, Niranjan, Thoreau, Hervé, Shahab, Atif, Ruan, Xiaoan, Cacheux-Rataboul, Valère, Wei, Chia-Lin, Bourque, Guillaume, Sung, Wing-Kin, Liu, Edison T., Ruan, Yijun
Publicado 2012

Detection of Chromosomal Breakpoints in Patients with Developmental Delay and Speech Disorders

por Utami, Kagistia H., Hillmer, Axel M., Aksoy, Irene, Chew, Elaine G. Y., Teo, Audrey S. M., Zhang, Zhenshui, Lee, Charlie W. H., Chen, Pauline J., Seng, Chan Chee, Ariyaratne, Pramila N., Rouam, Sigrid L., Soo, Lim Seong, Yousoof, Saira, Prokudin, Ivan, Peters, Gregory, Collins, Felicity, Wilson, Meredith, Kakakios, Alyson, Haddad, Georges, Menuet, Arnaud, Perche, Olivier, Tay, Stacey Kiat Hong, Sung, Ken W. K., Ruan, Xiaoan, Ruan, Yijun, Liu, Edison T., Briault, Sylvain, Jamieson, Robyn V., Davila, Sonia, Cacheux, Valere
Publicado 2014

Direct Evidence for Pitavastatin Induced Chromatin Structure Change in the KLF4 Gene in Endothelial Cells

por Maejima, Takashi, Inoue, Tsuyoshi, Kanki, Yasuharu, Kohro, Takahide, Li, Guoliang, Ohta, Yoshihiro, Kimura, Hiroshi, Kobayashi, Mika, Taguchi, Akashi, Tsutsumi, Shuichi, Iwanari, Hiroko, Yamamoto, Shogo, Aruga, Hirofumi, Dong, Shoulian, Stevens, Junko F., Poh, Huay Mei, Yamamoto, Kazuki, Kawamura, Takeshi, Mimura, Imari, Suehiro, Jun-ichi, Sugiyama, Akira, Kaneki, Kiyomi, Shibata, Haruki, Yoshinaka, Yasunobu, Doi, Takeshi, Asanuma, Akimune, Tanabe, Sohei, Tanaka, Toshiya, Minami, Takashi, Hamakubo, Takao, Sakai, Juro, Nozaki, Naohito, Aburatani, Hiroyuki, Nangaku, Masaomi, Ruan, Xiaoan, Tanabe, Hideyuki, Ruan, Yijun, Ihara, Sigeo, Endo, Akira, Kodama, Tatsuhiko, Wada, Youichiro
Publicado 2014

Whole-genome reconstruction and mutational signatures in gastric cancer

por Nagarajan, Niranjan, Bertrand, Denis, Hillmer, Axel M, Zang, Zhi Jiang, Yao, Fei, Jacques, Pierre-Étienne, Teo, Audrey SM, Cutcutache, Ioana, Zhang, Zhenshui, Lee, Wah Heng, Sia, Yee Yen, Gao, Song, Ariyaratne, Pramila N, Ho, Andrea, Woo, Xing Yi, Veeravali, Lavanya, Ong, Choon Kiat, Deng, Niantao, Desai, Kartiki V, Khor, Chiea Chuen, Hibberd, Martin L, Shahab, Atif, Rao, Jaideepraj, Wu, Mengchu, Teh, Ming, Zhu, Feng, Chin, Sze Yung, Pang, Brendan, So, Jimmy BY, Bourque, Guillaume, Soong, Richie, Sung, Wing-Kin, Tean Teh, Bin, Rozen, Steven, Ruan, Xiaoan, Yeoh, Khay Guan, Tan, Patrick BO, Ruan, Yijun
Publicado 2012

An Oestrogen Receptor α-bound Human Chromatin Interactome

por Fullwood, Melissa J., Liu, Mei Hui, Pan, You Fu, Liu, Jun, Han, Xu, Mohamed, Yusoff Bin, Orlov, Yuriy L., Velkov, Stoyan, Ho, Andrea, Mei, Poh Huay, Chew, Elaine G. Y., Huang, Phillips Yao Hui, Welboren, Willem-Jan, Han, Yuyuan, Ooi, Hong-Sain, Ariyaratne, Pramila N., Vega, Vinsensius B., Luo, Yanquan, Tan, Peck Yean, Choy, Pei Ye, Wansa, K. D. Senali Abayratna, Zhao, Bing, Lim, Kar Sian, Leow, Shi Chi, Yow, Jit Sin, Joseph, Roy, Li, Haixia, Desai, Kartiki V., Thomsen, Jane S., Lee, Yew Kok, Karuturi, R. Krishna Murthy, Herve, Thoreau, Bourque, Guillaume, Stunnenberg, Hendrik G., Ruan, Xiaoan, Cacheux-Rataboul, Valere, Sung, Wing-Kin, Liu, Edison T., Wei, Chia-Lin, Cheung, Edwin, Ruan, Yijun
Publicado 2009

Landscape of transcription in human cells

por Djebali, Sarah, Davis, Carrie A., Merkel, Angelika, Dobin, Alex, Lassmann, Timo, Mortazavi, Ali M., Tanzer, Andrea, Lagarde, Julien, Lin, Wei, Schlesinger, Felix, Xue, Chenghai, Marinov, Georgi K., Khatun, Jainab, Williams, Brian A., Zaleski, Chris, Rozowsky, Joel, Röder, Maik, Kokocinski, Felix, Abdelhamid, Rehab F., Alioto, Tyler, Antoshechkin, Igor, Baer, Michael T., Bar, Nadav S., Batut, Philippe, Bell, Kimberly, Bell, Ian, Chakrabortty, Sudipto, Chen, Xian, Chrast, Jacqueline, Curado, Joao, Derrien, Thomas, Drenkow, Jorg, Dumais, Erica, Dumais, Jacqueline, Duttagupta, Radha, Falconnet, Emilie, Fastuca, Meagan, Fejes-Toth, Kata, Ferreira, Pedro, Foissac, Sylvain, Fullwood, Melissa J., Gao, Hui, Gonzalez, David, Gordon, Assaf, Gunawardena, Harsha, Howald, Cedric, Jha, Sonali, Johnson, Rory, Kapranov, Philipp, King, Brandon, Kingswood, Colin, Luo, Oscar J., Park, Eddie, Persaud, Kimberly, Preall, Jonathan B., Ribeca, Paolo, Risk, Brian, Robyr, Daniel, Sammeth, Michael, Schaffer, Lorian, See, Lei-Hoon, Shahab, Atif, Skancke, Jorgen, Suzuki, Ana Maria, Takahashi, Hazuki, Tilgner, Hagen, Trout, Diane, Walters, Nathalie, Wang, Huaien, Wrobel, John, Yu, Yanbao, Ruan, Xiaoan, Hayashizaki, Yoshihide, Harrow, Jennifer, Gerstein, Mark, Hubbard, Tim, Reymond, Alexandre, Antonarakis, Stylianos E., Hannon, Gregory, Giddings, Morgan C., Ruan, Yijun, Wold, Barbara, Carninci, Piero, Guigó, Roderic, Gingeras, Thomas R.
Publicado 2012