The Future of Blood Testing Is the Immunome

por Arnaout, Ramy A., Prak, Eline T. Luning, Schwab, Nicholas, Rubelt, Florian
Publicado 2021

The Repertoire Dissimilarity Index as a method to compare lymphocyte receptor repertoires

por Bolen, Christopher R., Rubelt, Florian, Vander Heiden, Jason A., Davis, Mark M.
Publicado 2017

Analyzing the M. tuberculosis immune response by T cell receptor clustering with GLIPH2 and genome-wide antigen screening

por Huang, Huang, Wang, Chunlin, Rubelt, Florian, Scriba, Thomas J., Davis, Mark M.
Publicado 2020

Onset of Immune Senescence Defined by Unbiased Pyrosequencing of Human Immunoglobulin mRNA Repertoires

por Rubelt, Florian, Sievert, Volker, Knaust, Florian, Diener, Christian, Lim, Theam Soon, Skriner, Karl, Klipp, Edda, Reinhardt, Richard, Lehrach, Hans, Konthur, Zoltán
Publicado 2012

VDJPipe: a pipelined tool for pre-processing immune repertoire sequencing data

por Christley, Scott, Levin, Mikhail K., Toby, Inimary T., Fonner, John M., Monson, Nancy L., Rounds, William H., Rubelt, Florian, Scarborough, Walter, Scheuermann, Richard H., Cowell, Lindsay G.
Publicado 2017

Disrupted memory T cell expansion in HIV-exposed uninfected infants is preceded by premature skewing of T cell receptor clonality

por Dzanibe, Sonwabile, Wilk, Aaron J., Canny, Susan, Ranganath, Thanmayi, Alinde, Berenice, Rubelt, Florian, Huang, Huang, Davis, Mark M., Holmes, Susan, Jaspan, Heather B., Blish, Catherine A., Gray, Clive M.
Publicado 2023

The CAIRR Pipeline for Submitting Standards-Compliant B and T Cell Receptor Repertoire Sequencing Studies to the National Center for Biotechnology Information Repositories

por Bukhari, Syed Ahmad Chan, O’Connor, Martin J., Martínez-Romero, Marcos, Egyedi, Attila L., Willrett, Debra, Graybeal, John, Musen, Mark A., Rubelt, Florian, Cheung, Kei-Hoi, Kleinstein, Steven H.
Publicado 2018

Individual heritable differences result in unique cell lymphocyte receptor repertoires of naïve and antigen-experienced cells

por Rubelt, Florian, Bolen, Christopher R., McGuire, Helen M., Heiden, Jason A. Vander, Gadala-Maria, Daniel, Levin, Mikhail, M. Euskirchen, Ghia, Mamedov, Murad R., Swan, Gary E., Dekker, Cornelia L., Cowell, Lindsay G., Kleinstein, Steven H., Davis, Mark M.
Publicado 2016

VDJServer: A Cloud-Based Analysis Portal and Data Commons for Immune Repertoire Sequences and Rearrangements

por Christley, Scott, Scarborough, Walter, Salinas, Eddie, Rounds, William H., Toby, Inimary T., Fonner, John M., Levin, Mikhail K., Kim, Min, Mock, Stephen A., Jordan, Christopher, Ostmeyer, Jared, Buntzman, Adam, Rubelt, Florian, Davila, Marco L., Monson, Nancy L., Scheuermann, Richard H., Cowell, Lindsay G.
Publicado 2018

VDJML: a file format with tools for capturing the results of inferring immune receptor rearrangements

por Toby, Inimary T., Levin, Mikhail K., Salinas, Edward A., Christley, Scott, Bhattacharya, Sanchita, Breden, Felix, Buntzman, Adam, Corrie, Brian, Fonner, John, Gupta, Namita T., Hershberg, Uri, Marthandan, Nishanth, Rosenfeld, Aaron, Rounds, William, Rubelt, Florian, Scarborough, Walter, Scott, Jamie K., Uduman, Mohamed, Vander Heiden, Jason A., Scheuermann, Richard H., Monson, Nancy, Kleinstein, Steven H., Cowell, Lindsay G.
Publicado 2016

Reproducibility and Reuse of Adaptive Immune Receptor Repertoire Data

por Breden, Felix, Luning Prak, Eline T., Peters, Bjoern, Rubelt, Florian, Schramm, Chaim A., Busse, Christian E., Vander Heiden, Jason A., Christley, Scott, Bukhari, Syed Ahmad Chan, Thorogood, Adrian, Matsen IV, Frederick A., Wine, Yariv, Laserson, Uri, Klatzmann, David, Douek, Daniel C., Lefranc, Marie-Paule, Collins, Andrew M., Bubela, Tania, Kleinstein, Steven H., Watson, Corey T., Cowell, Lindsay G., Scott, Jamie K., Kepler, Thomas B.
Publicado 2017

Broader Epstein–Barr virus–specific T cell receptor repertoire in patients with multiple sclerosis

por Schneider-Hohendorf, Tilman, Gerdes, Lisa Ann, Pignolet, Béatrice, Gittelman, Rachel, Ostkamp, Patrick, Rubelt, Florian, Raposo, Catarina, Tackenberg, Björn, Riepenhausen, Marianne, Janoschka, Claudia, Wünsch, Christian, Bucciarelli, Florence, Flierl-Hecht, Andrea, Beltrán, Eduardo, Kümpfel, Tania, Anslinger, Katja, Gross, Catharina C., Chapman, Heidi, Kaplan, Ian, Brassat, David, Wekerle, Hartmut, Kerschensteiner, Martin, Klotz, Luisa, Lünemann, Jan D., Hohlfeld, Reinhard, Liblau, Roland, Wiendl, Heinz, Schwab, Nicholas
Publicado 2022

Correction: Broader Epstein–Barr virus–specific T cell receptor repertoire in patients with multiple sclerosis

por Schneider-Hohendorf, Tilman, Gerdes, Lisa Ann, Pignolet, Béatrice, Gittelman, Rachel, Ostkamp, Patrick, Rubelt, Florian, Raposo, Catarina, Tackenberg, Björn, Riepenhausen, Marianne, Janoschka, Claudia, Wünsch, Christian, Bucciarelli, Florence, Flierl-Hecht, Andrea, Beltrán, Eduardo, Kümpfel, Tania, Anslinger, Katja, Gross, Catharina C., Chapman, Heidi, Kaplan, Ian, Brassat, David, Wekerle, Hartmut, Kerschensteiner, Martin, Klotz, Luisa, Lünemann, Jan D., Hohlfeld, Reinhard, Liblau, Roland, Wiendl, Heinz, Schwab, Nicholas
Publicado 2022

Highly multiplexed immune repertoire sequencing links multiple lymphocyte classes with severity of response to COVID-19

por Richard, Dannebaum, Phillip, Suwalski, Hosseinali, Asgharian, Gracie, Du Zhipei, Hai, Lin, January, Weiner, Holtgrewe, Manuel, Charlotte, Thibeault, Melina, Müller, Xiaomin, Wang, Zehra, Karadeniz, Jacopo, Saccomanno, Jan-Moritz, Doehn, Ralf-Harto, Hübner, Bernd, Hinzmann, Anja, Blüher, Sandra, Siemann, Dilduz, Telman, Norbert, Suttorp, Martin, Witzenrath, Stefan, Hippenstiel, Carsten, Skurk, Wolfgang, Poller, Leif E, Sander, Dieter, Beule, Florian, Kurth, Toumy, Guettouche, Ulf, Landmesser, Jan, Berka, Khai, Luong, Rubelt, Florian, Bettina, Heidecker
Publicado 2022

Global patterns of antigen receptor repertoire disruption across adaptive immune compartments in COVID-19

por Joseph, Magdalene, Wu, Yin, Dannebaum, Richard, Rubelt, Florian, Zlatareva, Iva, Lorenc, Anna, Du, Zhipei Gracie, Davies, Daniel, Kyle-Cezar, Fernanda, Das, Abhishek, Gee, Sarah, Seow, Jeffrey, Graham, Carl, Telman, Dilduz, Bermejo, Clara, Lin, Hai, Asgharian, Hosseinali, Laing, Adam G., del Molino del Barrio, Irene, Monin, Leticia, Muñoz-Ruiz, Miguel, McKenzie, Duncan R., Hayday, Thomas S., Francos-Quijorna, Isaac, Kamdar, Shraddha, Davis, Richard, Sofra, Vasiliki, Cano, Florencia, Theodoridis, Efstathios, Martinez, Lauren, Merrick, Blair, Bisnauthsing, Karen, Brooks, Kate, Edgeworth, Jonathan, Cason, John, Mant, Christine, Doores, Katie J., Vantourout, Pierre, Luong, Khai, Berka, Jan, Hayday, Adrian C.
Publicado 2022