fqfa: A pure Python package for genomic sequence files

por Rubin, Alan F.
Publicado 2020

Expression-based segmentation of the Drosophila genome

por Rubin, Alan F, Green, Phil
Publicado 2013

Integrating deep mutational scanning and low-throughput mutagenesis data to predict the impact of amino acid variants

por Fu, Yunfan, Bedő, Justin, Papenfuss, Anthony T, Rubin, Alan F
Publicado 2023

Identifying New Hybrid Insulin Peptides (HIPs) in Type 1 Diabetes

por Mannering, Stuart I., Rubin, Alan F., Wang, Ruike, Bhattacharjee, Pushpak
Publicado 2021

A statistical framework for analyzing deep mutational scanning data

por Rubin, Alan F., Gelman, Hannah, Lucas, Nathan, Bajjalieh, Sandra M., Papenfuss, Anthony T., Speed, Terence P., Fowler, Douglas M.
Publicado 2017

Correction to: A statistical framework for analyzing deep mutational scanning data

por Rubin, Alan F., Gelman, Hannah, Lucas, Nathan, Bajjalieh, Sandra M., Papenfuss, Anthony T., Speed, Terence P., Fowler, Douglas M.
Publicado 2018

Human and viral membrane–associated E3 ubiquitin ligases MARCH1 and MIR2 recognize different features of CD86 to downregulate surface expression

por Trenker, Raphael, Wu, Xinyu, Nguyen, Julie V., Wilcox, Stephen, Rubin, Alan F., Call, Matthew E., Call, Melissa J.
Publicado 2021

MaveRegistry: a collaboration platform for multiplexed assays of variant effect

por Kuang, Da, Weile, Jochen, Kishore, Nishka, Nguyen, Maria, Rubin, Alan F, Fields, Stanley, Fowler, Douglas M, Roth, Frederick P
Publicado 2021

MaveDB: an open-source platform to distribute and interpret data from multiplexed assays of variant effect

por Esposito, Daniel, Weile, Jochen, Shendure, Jay, Starita, Lea M., Papenfuss, Anthony T., Roth, Frederick P., Fowler, Douglas M., Rubin, Alan F.
Publicado 2019

sccomp: Robust differential composition and variability analysis for single-cell data

por Mangiola, Stefano, Roth-Schulze, Alexandra J., Trussart, Marie, Zozaya-Valdés, Enrique, Ma, Mengyao, Gao, Zijie, Rubin, Alan F., Speed, Terence P., Shim, Heejung, Papenfuss, Anthony T.
Publicado 2023

An Atlas of Variant Effects to understand the genome at nucleotide resolution

por Fowler, Douglas M., Adams, David J., Gloyn, Anna L., Hahn, William C., Marks, Debora S., Muffley, Lara A., Neal, James T., Roth, Frederick P., Rubin, Alan F., Starita, Lea M., Hurles, Matthew E.
Publicado 2023

Recommendations for the collection and use of multiplexed functional data for clinical variant interpretation

por Gelman, Hannah, Dines, Jennifer N., Berg, Jonathan, Berger, Alice H., Brnich, Sarah, Hisama, Fuki M., James, Richard G., Rubin, Alan F., Shendure, Jay, Shirts, Brian, Fowler, Douglas M., Starita, Lea M.
Publicado 2019

Minimum information and guidelines for reporting a Multiplexed Assay of Variant Effect

por Claussnitzer, Melina, Parikh, Victoria N., Wagner, Alex H., Arbesfeld, Jeremy A., Bult, Carol J., Firth, Helen V., Muffley, Lara A., Nguyen Ba, Alex N., Riehle, Kevin, Roth, Frederick P., Tabet, Daniel, Bolognesi, Benedetta, Glazer, Andrew M., Rubin, Alan F.
Publicado 2023

GA4GH: International policies and standards for data sharing across genomic research and healthcare

por Rehm, Heidi L., Page, Angela J.H., Smith, Lindsay, Adams, Jeremy B., Alterovitz, Gil, Babb, Lawrence J., Barkley, Maxmillian P., Baudis, Michael, Beauvais, Michael J.S., Beck, Tim, Beckmann, Jacques S., Beltran, Sergi, Bernick, David, Bernier, Alexander, Bonfield, James K., Boughtwood, Tiffany F., Bourque, Guillaume, Bowers, Sarion R., Brookes, Anthony J., Brudno, Michael, Brush, Matthew H., Bujold, David, Burdett, Tony, Buske, Orion J., Cabili, Moran N., Cameron, Daniel L., Carroll, Robert J., Casas-Silva, Esmeralda, Chakravarty, Debyani, Chaudhari, Bimal P., Chen, Shu Hui, Cherry, J. Michael, Chung, Justina, Cline, Melissa, Clissold, Hayley L., Cook-Deegan, Robert M., Courtot, Mélanie, Cunningham, Fiona, Cupak, Miro, Davies, Robert M., Denisko, Danielle, Doerr, Megan J., Dolman, Lena I., Dove, Edward S., Dursi, L. Jonathan, Dyke, Stephanie O.M., Eddy, James A., Eilbeck, Karen, Ellrott, Kyle P., Fairley, Susan, Fakhro, Khalid A., Firth, Helen V., Fitzsimons, Michael S., Fiume, Marc, Flicek, Paul, Fore, Ian M., Freeberg, Mallory A., Freimuth, Robert R., Fromont, Lauren A., Fuerth, Jonathan, Gaff, Clara L., Gan, Weiniu, Ghanaim, Elena M., Glazer, David, Green, Robert C., Griffith, Malachi, Griffith, Obi L., Grossman, Robert L., Groza, Tudor, Guidry Auvil, Jaime M., Guigó, Roderic, Gupta, Dipayan, Haendel, Melissa A., Hamosh, Ada, Hansen, David P., Hart, Reece K., Hartley, Dean Mitchell, Haussler, David, Hendricks-Sturrup, Rachele M., Ho, Calvin W.L., Hobb, Ashley E., Hoffman, Michael M., Hofmann, Oliver M., Holub, Petr, Hsu, Jacob Shujui, Hubaux, Jean-Pierre, Hunt, Sarah E., Husami, Ammar, Jacobsen, Julius O., Jamuar, Saumya S., Janes, Elizabeth L., Jeanson, Francis, Jené, Aina, Johns, Amber L., Joly, Yann, Jones, Steven J.M., Kanitz, Alexander, Kato, Kazuto, Keane, Thomas M., Kekesi-Lafrance, Kristina, Kelleher, Jerome, Kerry, Giselle, Khor, Seik-Soon, Knoppers, Bartha M., Konopko, Melissa A., Kosaki, Kenjiro, Kuba, Martin, Lawson, Jonathan, Leinonen, Rasko, Li, Stephanie, Lin, Michael F., Linden, Mikael, Liu, Xianglin, Liyanage, Isuru Udara, Lopez, Javier, Lucassen, Anneke M., Lukowski, Michael, Mann, Alice L., Marshall, John, Mattioni, Michele, Metke-Jimenez, Alejandro, Middleton, Anna, Milne, Richard J., Molnár-Gábor, Fruzsina, Mulder, Nicola, Munoz-Torres, Monica C., Nag, Rishi, Nakagawa, Hidewaki, Nasir, Jamal, Navarro, Arcadi, Nelson, Tristan H., Niewielska, Ania, Nisselle, Amy, Niu, Jeffrey, Nyrönen, Tommi H., O’Connor, Brian D., Oesterle, Sabine, Ogishima, Soichi, Ota Wang, Vivian, Paglione, Laura A.D., Palumbo, Emilio, Parkinson, Helen E., Philippakis, Anthony A., Pizarro, Angel D., Prlic, Andreas, Rambla, Jordi, Rendon, Augusto, Rider, Renee A., Robinson, Peter N., Rodarmer, Kurt W., Rodriguez, Laura Lyman, Rubin, Alan F., Rueda, Manuel, Rushton, Gregory A., Ryan, Rosalyn S., Saunders, Gary I., Schuilenburg, Helen, Schwede, Torsten, Scollen, Serena, Senf, Alexander, Sheffield, Nathan C., Skantharajah, Neerjah, Smith, Albert V., Sofia, Heidi J., Spalding, Dylan, Spurdle, Amanda B., Stark, Zornitza, Stein, Lincoln D., Suematsu, Makoto, Tan, Patrick, Tedds, Jonathan A., Thomson, Alastair A., Thorogood, Adrian, Tickle, Timothy L., Tokunaga, Katsushi, Törnroos, Juha, Torrents, David, Upchurch, Sean, Valencia, Alfonso, Guimera, Roman Valls, Vamathevan, Jessica, Varma, Susheel, Vears, Danya F., Viner, Coby, Voisin, Craig, Wagner, Alex H., Wallace, Susan E., Walsh, Brian P., Williams, Marc S., Winkler, Eva C., Wold, Barbara J., Wood, Grant M., Woolley, J. Patrick, Yamasaki, Chisato, Yates, Andrew D., Yung, Christina K., Zass, Lyndon J., Zaytseva, Ksenia, Zhang, Junjun, Goodhand, Peter, North, Kathryn, Birney, Ewan
Publicado 2021